BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00037382
         (398 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36977.3| unnamed protein product [Vitis vinifera]              119   2e-25
ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago t...   107   1e-21
ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containi...    94   9e-18
ref|XP_002325018.1| predicted protein [Populus trichocarpa] gi|2...    94   9e-18
ref|XP_002878586.1| pentatricopeptide repeat-containing protein ...    94   1e-17

>emb|CBI36977.3| unnamed protein product [Vitis vinifera]
          Length = 372

 Score =  119 bits (299), Expect = 2e-25
 Identities = 56/112 (50%), Positives = 81/112 (72%)
 Frame = -3

Query: 345 SLTPTNLNRLLNEHIRNSQITHARKLFDQNPKSRDSVSWNLILSAYTKNNQIQNAQILFD 166
           +L+  NLNRL+N +IR   +  ARKLFDQNP SR++V WN I+SAY +N++  NAQ LFD
Sbjct: 17  TLSTANLNRLINGYIRKGNLRDARKLFDQNPTSRNTVIWNTIISAYIQNDEPHNAQNLFD 76

Query: 165 EMPKRDVVSWNTMLSGYQRNNDIDKAIRYFKQMGRIGITPSEFTYAAVITSV 10
           EMP RD+VSWNT LSG ++  + +     F +M R+G+ P+EFT + +I+++
Sbjct: 77  EMPDRDIVSWNTALSGLKKIKNPEGVYLCFLKMRRVGLKPNEFTLSIMISAI 128



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 34/102 (33%), Positives = 57/102 (55%)
 Frame = -3

Query: 324 NRLLNEHIRNSQITHARKLFDQNPKSRDSVSWNLILSAYTKNNQIQNAQILFDEMPKRDV 145
           N L+  ++       A+++F   P+ R+ VSW  +++ Y  N +   A+ +FD M +R+V
Sbjct: 188 NALVLGYMDLGDTDEAQRVFGLMPE-RNVVSWTTLVNGYIGNKKTSAARSVFDRMTERNV 246

Query: 144 VSWNTMLSGYQRNNDIDKAIRYFKQMGRIGITPSEFTYAAVI 19
           VSW  M+SGY +N     A+R F  M R G   + FT ++V+
Sbjct: 247 VSWTVMISGYVQNGKFVDALRLFLLMLRSGTQGNHFTLSSVL 288


>ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355501015|gb|AES82218.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 607

 Score =  107 bits (266), Expect = 1e-21
 Identities = 49/116 (42%), Positives = 77/116 (66%)
 Frame = -3

Query: 351 TCSLTPTNLNRLLNEHIRNSQITHARKLFDQNPKSRDSVSWNLILSAYTKNNQIQNAQIL 172
           T ++T   LN ++N +I N+ +  A KL D+N  S + VSWN++++AY ++NQI     L
Sbjct: 3   TVTITTPQLNYMINTYIDNNNVKQAHKLLDENLLSCNIVSWNMVMTAYLQHNQIGPVHDL 62

Query: 171 FDEMPKRDVVSWNTMLSGYQRNNDIDKAIRYFKQMGRIGITPSEFTYAAVITSVSS 4
           FD+MP +D VSWN MLSG+QR  + +   R F QMGR G+ P+++T + ++ +V S
Sbjct: 63  FDKMPLKDAVSWNIMLSGFQRTRNSEGLYRCFLQMGRAGVVPNDYTISTLLRAVIS 118



 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 36/111 (32%), Positives = 68/111 (61%)
 Frame = -3

Query: 333 TNLNRLLNEHIRNSQITHARKLFDQNPKSRDSVSWNLILSAYTKNNQIQNAQILFDEMPK 154
           T+ N L++ ++   +   A+  FDQ P+ R+ +SW  +++ Y KN Q+  A+ +FD+M +
Sbjct: 173 TSWNALVSSYMELGKFVDAQTAFDQMPQ-RNIISWTTLVNGYVKNKQVNKARSVFDDMSE 231

Query: 153 RDVVSWNTMLSGYQRNNDIDKAIRYFKQMGRIGITPSEFTYAAVITSVSSN 1
           R+VVSW  M+SGY +N     A++ F  M +    P+ FT+++V+ + + +
Sbjct: 232 RNVVSWTAMISGYVQNKRFVDALKLFVLMFKTETRPNHFTFSSVLDACAGS 282



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 26/82 (31%), Positives = 49/82 (59%)
 Frame = -3

Query: 246 RDSVSWNLILSAYTKNNQIQNAQILFDEMPKRDVVSWNTMLSGYQRNNDIDKAIRYFKQM 67
           +D  SWN ++S+Y +  +  +AQ  FD+MP+R+++SW T+++GY +N  ++KA   F  M
Sbjct: 170 KDVTSWNALVSSYMELGKFVDAQTAFDQMPQRNIISWTTLVNGYVKNKQVNKARSVFDDM 229

Query: 66  GRIGITPSEFTYAAVITSVSSN 1
               +     ++ A+I+    N
Sbjct: 230 SERNVV----SWTAMISGYVQN 247


>ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 45/104 (43%), Positives = 71/104 (68%)
 Frame = -3

Query: 324 NRLLNEHIRNSQITHARKLFDQNPKSRDSVSWNLILSAYTKNNQIQNAQILFDEMPKRDV 145
           NRL+  + + + I  +R+LFDQ PK RD  +WN IL AY K +++++A +LF EMP+R++
Sbjct: 44  NRLIEFYAKCNAIDASRRLFDQMPK-RDIYTWNAILGAYCKASELEDAHVLFAEMPERNI 102

Query: 144 VSWNTMLSGYQRNNDIDKAIRYFKQMGRIGITPSEFTYAAVITS 13
           VSWNT++S   RN    KA+  + +M R G  P+ FT A+V+++
Sbjct: 103 VSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFTLASVLSA 146



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 27/72 (37%), Positives = 43/72 (59%)
 Frame = -3

Query: 228 NLILSAYTKNNQIQNAQILFDEMPKRDVVSWNTMLSGYQRNNDIDKAIRYFKQMGRIGIT 49
           N +L  Y KN  + +A+++F  MP+  VVSWN M++GY + +   KAI Y ++M   G  
Sbjct: 291 NSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFE 350

Query: 48  PSEFTYAAVITS 13
           P E TY  ++ +
Sbjct: 351 PDEITYVNMLVA 362



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 23/69 (33%), Positives = 46/69 (66%)
 Frame = -3

Query: 222 ILSAYTKNNQIQNAQILFDEMPKRDVVSWNTMLSGYQRNNDIDKAIRYFKQMGRIGITPS 43
           ++  Y+K  +++ A+ +FD + + D+V WN+M++G   N+   +A  +FK+M   G+ PS
Sbjct: 460 LIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPS 519

Query: 42  EFTYAAVIT 16
           +F+YA V++
Sbjct: 520 QFSYATVLS 528


>ref|XP_002325018.1| predicted protein [Populus trichocarpa] gi|222866452|gb|EEF03583.1|
           predicted protein [Populus trichocarpa]
          Length = 695

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 43/104 (41%), Positives = 73/104 (70%)
 Frame = -3

Query: 324 NRLLNEHIRNSQITHARKLFDQNPKSRDSVSWNLILSAYTKNNQIQNAQILFDEMPKRDV 145
           NRLLN + ++ +I+HARKLFD+  + RD+ SWN +LS Y K+  +++ +++FD MP RD 
Sbjct: 62  NRLLNLYAKSGEISHARKLFDEMTQ-RDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDS 120

Query: 144 VSWNTMLSGYQRNNDIDKAIRYFKQMGRIGITPSEFTYAAVITS 13
           VS+NT++SG+  N     A+  F +M + G+ P+E+T+ +V+ +
Sbjct: 121 VSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNA 164


>ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297324425|gb|EFH54845.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 786

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 47/108 (43%), Positives = 66/108 (61%)
 Frame = -3

Query: 327 LNRLLNEHIRNSQITHARKLFDQNPKSRDSVSWNLILSAYTKNNQIQNAQILFDEMPKRD 148
           +N L+N + +     HARKLFD+ P  R + SWN +LSAY K   + ++   FD +P+RD
Sbjct: 52  MNNLMNVYSKTGYALHARKLFDEMPL-RTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRD 110

Query: 147 VVSWNTMLSGYQRNNDIDKAIRYFKQMGRIGITPSEFTYAAVITSVSS 4
            VSW TM+ GY+      KAIR   +M R GI PS+FT   V+ SV++
Sbjct: 111 SVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAA 158



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 33/108 (30%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
 Frame = -3

Query: 324 NRLLNEHIRNSQITHARKLFDQNPKSRDSVSWNLILSAYTKNNQIQNAQILFDEMPKRDV 145
           N LLN + +      A+ +FD+    +D  SWN +++ + +  Q+  A   F++M +RD+
Sbjct: 185 NSLLNMYAKCGDPMMAKVVFDRMVV-KDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI 243

Query: 144 VSWNTMLSGY-QRNNDIDKAIRYFKQMGRIGITPSEFTYAAVITSVSS 4
           V+WN+M+SGY QR  D+     + K +    ++P  FT A+V+++ ++
Sbjct: 244 VTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACAN 291



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
 Frame = -3

Query: 366 HTLTNTCSLTPTNLNRLLNEHIRNSQITHARKLFDQN-PKSRDSVSWNLILSAYTKNNQI 190
           H +T    ++   LN L++ + R   +  AR+L +Q   K      +  +L  Y K   +
Sbjct: 304 HIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDM 363

Query: 189 QNAQILFDEMPKRDVVSWNTMLSGYQRNNDIDKAIRYFKQMGRIGITPSEFTYAAVITSV 10
             A+ +FD +  RDVV+W  M+ GY+++    +AI  F+ M      P+ +T AA+++  
Sbjct: 364 NEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVA 423

Query: 9   SS 4
           SS
Sbjct: 424 SS 425