BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00037242
         (355 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             115   4e-24
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...   110   1e-22
emb|CAN62339.1| hypothetical protein VITISV_035643 [Vitis vinifera]   109   3e-22
gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc...   108   3e-22
emb|CAN84122.1| hypothetical protein VITISV_005635 [Vitis vinifera]   108   3e-22

>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  115 bits (288), Expect = 4e-24
 Identities = 58/125 (46%), Positives = 87/125 (69%), Gaps = 7/125 (5%)
 Frame = -2

Query: 354  GYLMTRRGIEANPDH--AVIDMSSPKNKKEIQRLTSRLAALHRFISKYSDRCHPFFQTLK 181
            GY++T+RGIEANP    A++++ SP+N +E+QRLT R+AAL+RFIS+ +D+C PF+  LK
Sbjct: 1025 GYVVTKRGIEANPKQIRAILELPSPRNAREVQRLTGRIAALNRFISRSTDKCLPFYNLLK 1084

Query: 180  RAA--TWNVDCEMALQQLKKYLVSPPILTSSSTSQPIGIYLAATTQAVSAVLFVDD---G 16
            R A   W+ D E A ++LK YL +PPIL      + + +Y+A +  AVS+VL  +D    
Sbjct: 1085 RRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLVREDRGEQ 1144

Query: 15   RPVFF 1
            RP+F+
Sbjct: 1145 RPIFY 1149


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  110 bits (275), Expect = 1e-22
 Identities = 57/125 (45%), Positives = 85/125 (68%), Gaps = 7/125 (5%)
 Frame = -2

Query: 354  GYLMTRRGIEANPD--HAVIDMSSPKNKKEIQRLTSRLAALHRFISKYSDRCHPFFQTLK 181
            GY++T+RGIEANP+  +A ++M SPKN KE+QRLT R+AAL+RFIS+ +D+  PF+Q LK
Sbjct: 665  GYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRLTGRIAALNRFISRSTDKSLPFYQILK 724

Query: 180  --RAATWNVDCEMALQQLKKYLVSPPILTSSSTSQPIGIYLAATTQAVSAVLFVDD---G 16
              +   W+  CE A  QLK YL SPP+L      + + +Y++ +  AVS VL  +D    
Sbjct: 725  GNKEFLWDEKCEEAFGQLKAYLTSPPVLFKPELDEKLYLYVSVSNHAVSGVLIREDRGEQ 784

Query: 15   RPVFF 1
            +P+++
Sbjct: 785  KPIYY 789


>emb|CAN62339.1| hypothetical protein VITISV_035643 [Vitis vinifera]
          Length = 1021

 Score =  109 bits (272), Expect = 3e-22
 Identities = 55/126 (43%), Positives = 87/126 (69%), Gaps = 8/126 (6%)
 Frame = -2

Query: 354 GYLMTRRGIEANPDH--AVIDMSSPKNKKEIQRLTSRLAALHRFISKYSDRCHPFFQTLK 181
           G+++++RGIE +PD   AV++   P+NKKE+QRLT +L AL RFI++++D   PFF  ++
Sbjct: 191 GFMVSQRGIEVSPDQVKAVMETPPPRNKKELQRLTGKLVALGRFIARFTDELRPFFLAIR 250

Query: 180 RAAT--WNVDCEMALQQLKKYLVSPPILTSSSTSQPIGIYLAATTQAVSAVLFV----DD 19
           +A T  W  +C+ AL+++K YLV PPIL+S    + + +YLA +  A+SAVLF      +
Sbjct: 251 KAGTHGWTDNCQNALERIKHYLVHPPILSSXIPKEKLYMYLAVSEWAISAVLFXCPSPKE 310

Query: 18  GRPVFF 1
            RPV++
Sbjct: 311 QRPVYY 316


>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1980

 Score =  108 bits (271), Expect = 3e-22
 Identities = 59/125 (47%), Positives = 82/125 (65%), Gaps = 7/125 (5%)
 Frame = -2

Query: 354  GYLMTRRGIEANPDH--AVIDMSSPKNKKEIQRLTSRLAALHRFISKYSDRCHPFFQTLK 181
            G+L+++RGIEANPD   A+  M  PKN +E+QRLT R+A+L RF+SK +++  PFF+TL+
Sbjct: 1188 GFLVSKRGIEANPDKIAAIHQMEPPKNTREVQRLTGRMASLSRFLSKSAEKGLPFFKTLR 1247

Query: 180  RAAT--WNVDCEMALQQLKKYLVSPPILTSSSTSQPIGIYLAATTQAVSAVLFVDDGR-- 13
             A T  W  +C+ A   LKKYL   P L S    QP+ +Y+AAT   VSAVL  ++    
Sbjct: 1248 GANTFEWTAECQQAFDDLKKYLHEMPTLASPPKGQPLLMYVAATPATVSAVLVQEEENRQ 1307

Query: 12   -PVFF 1
             PV+F
Sbjct: 1308 VPVYF 1312


>emb|CAN84122.1| hypothetical protein VITISV_005635 [Vitis vinifera]
          Length = 977

 Score =  108 bits (271), Expect = 3e-22
 Identities = 55/126 (43%), Positives = 87/126 (69%), Gaps = 8/126 (6%)
 Frame = -2

Query: 354 GYLMTRRGIEANPDH--AVIDMSSPKNKKEIQRLTSRLAALHRFISKYSDRCHPFFQTLK 181
           G+++++RGIE +PD   AV++   P+NKKE+QRLT +L AL RFI++++D   PFF  ++
Sbjct: 172 GFMVSQRGIEVSPDQVKAVMETPPPRNKKELQRLTGKLVALGRFIARFTDELRPFFLAIR 231

Query: 180 RAAT--WNVDCEMALQQLKKYLVSPPILTSSSTSQPIGIYLAATTQAVSAVLF----VDD 19
           +A T  W  +C+ AL+++K YLV PPIL+S    + + +YLA +  A+SAVLF      +
Sbjct: 232 KAGTHGWTDNCQNALERIKHYLVHPPILSSPIPKEKLYMYLAVSEWAISAVLFRCPSPKE 291

Query: 18  GRPVFF 1
            RPV++
Sbjct: 292 QRPVYY 297