BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00037224
         (324 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    85   7e-15
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...    79   4e-13
gb|ABD32279.2| reverse transcriptase, putative [Medicago truncat...    72   4e-11
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    72   4e-11
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...    70   1e-10

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 33/101 (32%), Positives = 62/101 (61%)
 Frame = -2

Query: 305  KFMTLNWEKTCKPQEEGGLGLRRLKDINLAMLMKLSWSLENDNNDWAMYMKGKYGARSDE 126
            K  T++W+  C+P  EGGL ++  + IN A ++KL+W+L + N+ WA+ +K ++ ++   
Sbjct: 772  KVCTVSWKILCRPWSEGGLDIKSTRLINNAAMLKLAWNLLSSNSQWAVLLKRRFFSQGQP 831

Query: 125  WTKYKTSTIWPGIKWALKESKVHTTWVIGTGEAINTWKENW 3
               +  S++W G+K  +   + +  W++GTG+ IN W  NW
Sbjct: 832  IRYFVKSSVWHGVKNHMSILRQNKLWIVGTGDRINLWTNNW 872


>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 7/111 (6%)
 Frame = -2

Query: 314 TEKKFMTLNWEKTCKPQEEGGLGLRRLKDINLAMLMKLSWSLENDNND-WAMYMKGKY-- 144
           T++K   ++W++ CKP+ EGGLG+R+ +D+N A+L K+ W L  D +  WA  M+  Y  
Sbjct: 357 TQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRCNYRV 416

Query: 143 -GARSDEWTKYKT--STIWPGIKWALKESKV-HTTWVIGTGEAINTWKENW 3
              R   WTK ++  S+ W  +   ++E  +   +WVIG G  I  W + W
Sbjct: 417 QDVRDGAWTKVRSVCSSTWRSVALGMREVVIPGLSWVIGDGREILFWMDKW 467


>gb|ABD32279.2| reverse transcriptase, putative [Medicago truncatula]
          Length = 480

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 31/101 (30%), Positives = 53/101 (52%)
 Frame = -2

Query: 305 KFMTLNWEKTCKPQEEGGLGLRRLKDINLAMLMKLSWSLENDNNDWAMYMKGKYGARSDE 126
           K  T++W+  C+P   GGL ++    IN ++++ L+W     ++ WA  M  ++      
Sbjct: 309 KVCTVSWKVMCRPWAAGGLDIKPTCLINESLILLLAWQFSTADSQWAALMHHRFLKHGTP 368

Query: 125 WTKYKTSTIWPGIKWALKESKVHTTWVIGTGEAINTWKENW 3
              Y  S++W GIK  L     ++ W++GTG  IN W +NW
Sbjct: 369 LQHYFLSSMWGGIKEHLSTISSNSIWIVGTGANINLWTDNW 409


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
 Frame = -2

Query: 311  EKKFMTLNWEKTCKPQEEGGLGLRRLKDINLAMLMKLSWSLENDNND-WAMYMKGKY--- 144
            +KK   L+W K CKP+ EGG+GLR  +D+N A++ K+ W L  D    WA  ++ KY   
Sbjct: 696  KKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKVG 755

Query: 143  GARSDEWTK--YKTSTIWPGIKWALKESKVH-TTWVIGTGEAINTWKENW 3
            G +   W K   + S+ W  +   L+E  V    WV G G  I  W + W
Sbjct: 756  GVQDTSWLKPQPRWSSTWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRW 805


>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
 Frame = -2

Query: 323 GNPTEKKFMTL-NWEKTCKPQEEGGLGLRRLKDINLAMLMKLSWSLENDNND-WAMYMKG 150
           G+  EKK   L  W K C P++EGGLG+R  K +N A++ K+ W L  + N  W + ++ 
Sbjct: 76  GSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQK 135

Query: 149 KYGA---RSDEW--TKYKTSTIWPGIKWALKESKVH-TTWVIGTGEAINTWKENW 3
           KY     R   W   K   S+ W  I   L++   H   W+ G G+ I  W + W
Sbjct: 136 KYHVGEIRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTDRW 190