BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00037206
         (613 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ...    74   4e-13
emb|CAN75081.1| hypothetical protein VITISV_027743 [Vitis vinifera]    72   4e-12
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta...    69   5e-11
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...    61   6e-11
gb|AFW65836.1| hypothetical protein ZEAMMB73_825751 [Zea mays]         70   3e-10

>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
          Length = 799

 Score = 73.9 bits (180), Expect(2) = 4e-13
 Identities = 39/110 (35%), Positives = 63/110 (57%)
 Frame = -3

Query: 611 NIISSEFGKHIGTVKHKSIIALSWVFPPRGWYKLNTDGSALGSPGYGGAGCLFRGDDGRF 432
           +++    GK  G ++      +SWV P  GW KLNTDG++ G+PG   AG + R  DG +
Sbjct: 607 HLVEGNSGKIRGRIERM----VSWVKPAEGWLKLNTDGASKGNPGLATAGGILRQQDGSW 662

Query: 431 VGAAAIPSPCASSLMAEALAIRMGLKLADTKHLTPLILETDSKVVMHFIT 282
           +G  A+     S+ +AE   +  GL +A  + +T L +E DS++V+ F+T
Sbjct: 663 IGGFAVNIGICSAPLAELWRVYYGLYIAWERKITRLEVEVDSELVVGFLT 712



 Score = 25.8 bits (55), Expect(2) = 4e-13
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 277 WIIHHHGKLLMLLMIFDICCGKYPRYMWYCYRETNTGADYLANFGSKL 134
           WI   H    ++ + +      +   + + YRE N  AD LAN+ S L
Sbjct: 714 WISDSHPLSFLVRLCYGFISRDWIVRISHVYREANRLADGLANYASSL 761


>emb|CAN75081.1| hypothetical protein VITISV_027743 [Vitis vinifera]
          Length = 395

 Score = 72.0 bits (175), Expect(2) = 4e-12
 Identities = 42/115 (36%), Positives = 60/115 (52%)
 Frame = -3

Query: 545 SWVFPPRGWYKLNTDGSALGSPGYGGAGCLFRGDDGRFVGAAAIPSPCASSLMAEALAIR 366
           SW  P  GW KLN DGS  G  G  G G L R   G F+ A A P   ++SLMAE  A+ 
Sbjct: 226 SWHRPGAGWVKLNFDGSFKGRTGRAGGGGLLRDAQGSFIAAFATPLDTSNSLMAEIGALE 285

Query: 365 MGLKLADTKHLTPLILETDSKVVMHFITHLDHPPPWEVVDVIDDIRHMLRQIPEV 201
            GL+LA   ++  +++E DSK+ +  ++        E   ++  IR +L+   EV
Sbjct: 286 GGLRLALKLNVERILIEGDSKITIEMLSGKREXTXEEEKSLMTHIRELLQGFQEV 340



 Score = 24.6 bits (52), Expect(2) = 4e-12
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 187 YRETNTGADYLANFGSKLASQINW 116
           +RE N  AD+LAN  ++    + W
Sbjct: 346 FREANRPADHLANIATQAHEPMEW 369


>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 321

 Score = 69.3 bits (168), Expect(2) = 5e-11
 Identities = 35/89 (39%), Positives = 54/89 (60%)
 Frame = -3

Query: 548 LSWVFPPRGWYKLNTDGSALGSPGYGGAGCLFRGDDGRFVGAAAIPSPCASSLMAEALAI 369
           +SWV P  GW KLNTDG++ G+PG+  AG + R  +G ++G  A+     S+ +AE   +
Sbjct: 151 VSWVSPEDGWVKLNTDGASRGNPGFATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGV 210

Query: 368 RMGLKLADTKHLTPLILETDSKVVMHFIT 282
             GL +A  +    + LE DSK+V+ F+T
Sbjct: 211 YYGLFIAWGRGARRVELEVDSKMVVGFLT 239



 Score = 23.5 bits (49), Expect(2) = 5e-11
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 274 IIHHHGKLLMLLMIFDICCGKYPRYMWYCYRETNTGADYLANFGSKLA 131
           I   H    +L + +D     +   + + YRE N  AD LAN+   L+
Sbjct: 242 IADSHPLSFLLRLCYDFLSKGWIVRISHVYREANRLADGLANYAFSLS 289


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score = 60.8 bits (146), Expect(2) = 6e-11
 Identities = 35/98 (35%), Positives = 50/98 (51%)
 Frame = -3

Query: 554  IALSWVFPPRGWYKLNTDGSALGSPGYGGAGCLFRGDDGRFVGAAAIPSPCASSLMAEAL 375
            I + W  P  GW KLNTDG++ G+PG  G G L RG  G      AI     +   AE L
Sbjct: 1205 ILVRWQCPKEGWVKLNTDGASKGNPGPAGGGGLIRGPRGEIHEVFAINCGSCTCTKAELL 1264

Query: 374  AIRMGLKLADTKHLTPLILETDSKVVMHFITHLDHPPP 261
            A+  GL +A   +   +I+  DS++V   +  + + PP
Sbjct: 1265 AVLRGLMIAWEGNHKQVIVSVDSELVAKLL--ISNAPP 1300



 Score = 31.6 bits (70), Expect(2) = 6e-11
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
 Frame = -1

Query: 235  IFDICCGKYPRYMW-----YCYRETNTGADYLANFGSKLASQINWSYVHRHIIPEEYH 77
            I + C     R  W     +CYRETN  AD LAN G     ++    V    IP++ H
Sbjct: 1307 IINRCLSLIARKEWKIVIEHCYRETNRAADRLANMGVCAVERV----VMIEAIPKDLH 1360


>gb|AFW65836.1| hypothetical protein ZEAMMB73_825751 [Zea mays]
          Length = 279

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
 Frame = -3

Query: 548 LSWVFPPRGWYKLNTDGSALGSPGYGGAGCLFRGDDGRFVGA-AAIPSPCASSLMAEALA 372
           L W  PP G+YK+N DGS L   G GG GC+ RG DG F+ A A   +  +S+L AE++A
Sbjct: 112 LKWQPPPAGFYKINCDGSYLAKSGLGGWGCIIRGHDGSFLAAGAGTLTGISSTLHAESVA 171

Query: 371 IRMGLKLADTKHLTPLILETDSKVVMHFITHLDH 270
              GL+LA    +  +++ETD+ ++   +T  ++
Sbjct: 172 CMKGLELAVFLGMQNVMIETDAAILKTALTSQEY 205