BLASTX nr result
ID: Coptis25_contig00037191
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00037191
(550 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas... 72 2e-18
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga... 69 5e-17
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga... 66 1e-15
emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga... 66 1e-15
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 74 2e-14
>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 528
Score = 71.6 bits (174), Expect(3) = 2e-18
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Frame = +1
Query: 295 IQETLNI---KEGSLPEKYLGVPLVMGRVTKAALAPLVDKIRRKASGWAGKLLSFQGRVV 465
+Q+ +N+ +GS P YLGVP+ G+ L P+VDKI+ K S W +LS GRV
Sbjct: 384 LQQLINVIGFNKGSFPFNYLGVPIFKGKPKARFLQPIVDKIKTKLSNWKASILSIAGRVQ 443
Query: 466 FARHVLNSIPVHNMTIYKWRKSVIRECE 549
+ V S+ +H +TIY W +++E E
Sbjct: 444 LIKSVAQSMLIHTITIYDWPSFLLKELE 471
Score = 39.7 bits (91), Expect(3) = 2e-18
Identities = 17/28 (60%), Positives = 24/28 (85%)
Frame = +2
Query: 5 GDTISPMLFALAEDCLSRNISKLVQEKK 88
GD +SP+LF LAED LSR+++KLV++ K
Sbjct: 322 GDPLSPLLFCLAEDVLSRSLTKLVEQGK 349
Score = 26.2 bits (56), Expect(3) = 2e-18
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 123 PSHLMFTDDVFLFSNANMRCTR 188
PSH+++ DD+ +F N + R
Sbjct: 362 PSHILYADDIMIFCNGGISDAR 383
>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1355
Score = 69.3 bits (168), Expect(3) = 5e-17
Identities = 36/106 (33%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Frame = +1
Query: 235 INKDKCKIFLSP-MSIRRRTIIQETLNIKEGSLPEKYLGVPLVMGRVTKAALAPLVDKIR 411
IN +K ++ S +S+ ++ + LN+++ EKYLG+P + GR KA L+D+I
Sbjct: 718 INYEKSEVSYSRGVSVSQKDELTNILNMRQVDRHEKYLGIPSISGRSKKAIFDSLIDRIW 777
Query: 412 RKASGWAGKLLSFQGRVVFARHVLNSIPVHNMTIYKWRKSVIRECE 549
+K GW KLLS G+ V + V+ +IP + M +YK+ +I++ +
Sbjct: 778 KKLQGWKEKLLSRAGKEVLLKSVIQAIPTYLMGVYKFPVFIIQKIQ 823
Score = 33.9 bits (76), Expect(3) = 5e-17
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 126 SHLMFTDDVFLFSNANMRCTRQLVRLRNRYQDSSGQ 233
SHL F DD LF+ AN + +V + N+Y+ +SGQ
Sbjct: 681 SHLFFADDSLLFTRANRQECTIIVDILNQYELASGQ 716
Score = 29.3 bits (64), Expect(3) = 5e-17
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 5 GDTISPMLFALAEDCLSRNISKLVQEKK 88
GD +SP LF + D S+ I + VQ+K+
Sbjct: 640 GDPLSPYLFIMVADAFSKMIQRKVQDKQ 667
>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1362
Score = 66.2 bits (160), Expect(3) = 1e-15
Identities = 36/106 (33%), Positives = 58/106 (54%)
Frame = +1
Query: 226 QGNINKDKCKIFLSPMSIRRRTIIQETLNIKEGSLPEKYLGVPLVMGRVTKAALAPLVDK 405
Q N++K + +F + RR+ I L +KE EKYLG+P ++GR K A + ++
Sbjct: 716 QVNLSKTEV-VFSRSVDRERRSAIVNVLGVKEVDRQEKYLGLPTIIGRSKKVTFACIKER 774
Query: 406 IRRKASGWAGKLLSFQGRVVFARHVLNSIPVHNMTIYKWRKSVIRE 543
I +K GW KLLS G+ V + V +IP + M+++ +I E
Sbjct: 775 IWKKLQGWKEKLLSRPGKEVLIKSVAQAIPTYMMSVFSLPSGLIDE 820
Score = 30.8 bits (68), Expect(3) = 1e-15
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +2
Query: 5 GDTISPMLFALAEDCLSRNISKLVQEKK 88
GD ISP LF L D S +SK EKK
Sbjct: 639 GDPISPYLFLLCADAFSTLLSKAASEKK 666
Score = 30.8 bits (68), Expect(3) = 1e-15
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 126 SHLMFTDDVFLFSNANMRCTRQLVRLRNRYQDSSGQ 233
SHL F DD LF+ A+++ + + ++Y+ +SGQ
Sbjct: 680 SHLFFADDSILFTKASVQECSMVADIISKYERASGQ 715
>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1355
Score = 65.9 bits (159), Expect(3) = 1e-15
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Frame = +1
Query: 235 INKDKCKI-FLSPMSIRRRTIIQETLNIKEGSLPEKYLGVPLVMGRVTKAALAPLVDKIR 411
IN DK ++ F +SI ++ + L +K+ KYLG+P + GR A L+D+I
Sbjct: 718 INYDKSEVSFSKGVSIAQKEELSNILQMKQVERHMKYLGIPSITGRSRTAIFDSLMDRIW 777
Query: 412 RKASGWAGKLLSFQGRVVFARHVLNSIPVHNMTIYKWRKSVIRE 543
+K GW KLLS G+ + + V+ +IP + M +YK S+I++
Sbjct: 778 KKLQGWKEKLLSRAGKEILLKSVIQAIPTYLMGVYKLPCSIIQK 821
Score = 32.0 bits (71), Expect(3) = 1e-15
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +2
Query: 5 GDTISPMLFALAEDCLSRNISKLVQEKK 88
GD +SP LF L D S+ I K VQEK+
Sbjct: 640 GDPLSPYLFILIADAFSKMIQKKVQEKQ 667
Score = 29.6 bits (65), Expect(3) = 1e-15
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 126 SHLMFTDDVFLFSNANMRCTRQLVRLRNRYQDSSGQ 233
SHL F D LF+ A+ + +V + N Y+ +SGQ
Sbjct: 681 SHLFFADVSLLFTRASRQECAIIVEILNLYEQASGQ 716
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 74.3 bits (181), Expect(3) = 2e-14
Identities = 37/105 (35%), Positives = 66/105 (62%)
Frame = +1
Query: 235 INKDKCKIFLSPMSIRRRTIIQETLNIKEGSLPEKYLGVPLVMGRVTKAALAPLVDKIRR 414
I+ +K IF++ +S +T I + + G+LP KYLG+PL+ R+T++ PLV+KIR
Sbjct: 883 ISLEKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRA 942
Query: 415 KASGWAGKLLSFQGRVVFARHVLNSIPVHNMTIYKWRKSVIRECE 549
+ + W + LSF GR+ + VL+SI +++++ K+ ++E E
Sbjct: 943 RITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIE 987
Score = 26.9 bits (58), Expect(3) = 2e-14
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 5 GDTISPMLFALAEDCLSRNISKLVQEKKSAYGGKC 109
G ++SP L+ + + LS + K EKK +Y +C
Sbjct: 806 GCSLSPYLYVICMNVLSCMLDKAAVEKKISYHPRC 840
Score = 22.3 bits (46), Expect(3) = 2e-14
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +3
Query: 126 SHLMFTDDVFLFSNANMR 179
+HL F DD+ +FS+ +
Sbjct: 846 THLCFADDIMVFSDGTSK 863