BLASTX nr result

ID: Coptis25_contig00037169 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00037169
         (520 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002325861.1| predicted protein [Populus trichocarpa] gi|2...   116   2e-24
ref|XP_002275399.1| PREDICTED: microfibrillar-associated protein...   112   3e-23
ref|XP_002319725.1| predicted protein [Populus trichocarpa] gi|2...   110   9e-23
emb|CAN78798.1| hypothetical protein VITISV_035471 [Vitis vinifera]   110   9e-23
ref|XP_003531215.1| PREDICTED: microfibrillar-associated protein...   108   5e-22

>ref|XP_002325861.1| predicted protein [Populus trichocarpa] gi|222862736|gb|EEF00243.1|
           predicted protein [Populus trichocarpa]
          Length = 436

 Score =  116 bits (291), Expect = 2e-24
 Identities = 74/179 (41%), Positives = 87/179 (48%), Gaps = 6/179 (3%)
 Frame = +1

Query: 1   GKIGRTKVQRYWPGKAPAWADSVEEEGEVRTSNRAVALEEVFPRNEDGGQVXXXXXXXXX 180
           GKIG+TKV+RYWPGKAP WAD  EE+G++R + R  +LE+ FP  +D   V         
Sbjct: 20  GKIGQTKVKRYWPGKAPEWADDAEEDGDIRMA-RVASLEKAFPSRDDSDVVSRKDDPRLR 78

Query: 181 XXXXXXXXNKDEVRADHRRIRQAEIVST---IXXXXXXXXXXXXXXXXXXXXXXSTKEKL 351
                   N+DE+RADHRRIRQAEI+ST                            KEKL
Sbjct: 79  RLAETRIDNRDEMRADHRRIRQAEIISTEEEETRKQEWADMEEDDEDALEERRRRIKEKL 138

Query: 352 LQREHEETQLLPV---XXXXXXXXXXXXXXXXXXXXXXLTGTAREKAVFVPNSERDTIA 519
            QRE EE  LLPV                         +TG A  K VFVP SERDTIA
Sbjct: 139 RQREREEAALLPVEEEEEEDEVEEEEEESEYETDSEEEMTGMAMVKPVFVPKSERDTIA 197


>ref|XP_002275399.1| PREDICTED: microfibrillar-associated protein 1-like [Vitis
           vinifera]
          Length = 436

 Score =  112 bits (280), Expect = 3e-23
 Identities = 71/178 (39%), Positives = 88/178 (49%), Gaps = 5/178 (2%)
 Frame = +1

Query: 1   GKIGRTKVQRYWPGKAPAWADSVEEEGEV-RTSNRAVALEEVFPRNEDGGQVXXXXXXXX 177
           GKIG+TKV+RYWPGKAP WAD V+E+  +  TS  ++ALE+ FP  E+   +        
Sbjct: 20  GKIGQTKVKRYWPGKAPEWADDVDEDAHIGTTSGASIALEKAFPSREEDVGIVKKDDPRL 79

Query: 178 XXXXXXXXXNKDEVRADHRRIRQAEIVSTI---XXXXXXXXXXXXXXXXXXXXXXSTKEK 348
                    N+DEVRADHRRIRQAEIVSTI                           +E+
Sbjct: 80  RRLAESRIDNRDEVRADHRRIRQAEIVSTIEEENKRQEGLDLEEEDEDALEERRRRIRER 139

Query: 349 LLQREHEETQLLP-VXXXXXXXXXXXXXXXXXXXXXXLTGTAREKAVFVPNSERDTIA 519
           LL+++ EE  LLP                        LTG A  K VFVP SERDT+A
Sbjct: 140 LLRQQQEEAALLPEEEEDEAEEEEEEESEYETDSEEELTGIAMVKPVFVPKSERDTVA 197


>ref|XP_002319725.1| predicted protein [Populus trichocarpa] gi|222858101|gb|EEE95648.1|
           predicted protein [Populus trichocarpa]
          Length = 435

 Score =  110 bits (276), Expect = 9e-23
 Identities = 73/178 (41%), Positives = 87/178 (48%), Gaps = 5/178 (2%)
 Frame = +1

Query: 1   GKIGRTKVQRYWPGKAPAWADSVEEEGEVRTSNRAVALEEVFPRNEDGGQV-XXXXXXXX 177
           GKIG+TKV+RYWPGKAP WAD  +E+G++R + RA AL++ FP  +D   V         
Sbjct: 20  GKIGQTKVKRYWPGKAPEWADDADEDGDIRMA-RAAALDKAFPIRDDSYDVAASKDDPRL 78

Query: 178 XXXXXXXXXNKDEVRADHRRIRQAEIVST---IXXXXXXXXXXXXXXXXXXXXXXSTKEK 348
                    N+DEVRADHRRIRQAEI+ST                            KEK
Sbjct: 79  RRLAESRIDNRDEVRADHRRIRQAEIISTEEEEMRRQEWADMEEEDEDALEERRRRIKEK 138

Query: 349 LLQREHEETQLLPV-XXXXXXXXXXXXXXXXXXXXXXLTGTAREKAVFVPNSERDTIA 519
           L  RE EE  LLP+                       +TG A  K VFVP SERDTIA
Sbjct: 139 LRHREQEEAVLLPIEEEEEVEEEEEEESEYETDSEEEMTGMAMVKPVFVPKSERDTIA 196


>emb|CAN78798.1| hypothetical protein VITISV_035471 [Vitis vinifera]
          Length = 414

 Score =  110 bits (276), Expect = 9e-23
 Identities = 70/178 (39%), Positives = 87/178 (48%), Gaps = 5/178 (2%)
 Frame = +1

Query: 1   GKIGRTKVQRYWPGKAPAWADSVEEEGEV-RTSNRAVALEEVFPRNEDGGQVXXXXXXXX 177
           GKIG+TKV+RYWPGKAP WAD  +E+  +  TS  ++ALE+ FP  E+   +        
Sbjct: 20  GKIGQTKVKRYWPGKAPEWADDADEDAHIGTTSGASIALEKAFPSREEDVGIVKKDDPRL 79

Query: 178 XXXXXXXXXNKDEVRADHRRIRQAEIVSTI---XXXXXXXXXXXXXXXXXXXXXXSTKEK 348
                    N+DEVRADHRRIRQAEIVSTI                           +E+
Sbjct: 80  RRLAESRIDNRDEVRADHRRIRQAEIVSTIEEENKRQEGLDLEEEDEDALEERRRRIRER 139

Query: 349 LLQREHEETQLLP-VXXXXXXXXXXXXXXXXXXXXXXLTGTAREKAVFVPNSERDTIA 519
           LL+++ EE  LLP                        LTG A  K VFVP SERDT+A
Sbjct: 140 LLRQQQEEAALLPEEEEDEAEEEEEEESEYETDSEEELTGIAMVKPVFVPKSERDTVA 197


>ref|XP_003531215.1| PREDICTED: microfibrillar-associated protein 1-like [Glycine max]
          Length = 440

 Score =  108 bits (270), Expect = 5e-22
 Identities = 73/180 (40%), Positives = 83/180 (46%), Gaps = 7/180 (3%)
 Frame = +1

Query: 1   GKIGRTKVQRYWPGKAPAWADSVEEE----GEVRTSNRAVALEEVFPRNEDGGQVXXXXX 168
           GKIG+TKV+RYWPGK P WAD   EE     ++R S R  ALE+ FPR+E+   +     
Sbjct: 20  GKIGQTKVKRYWPGKVPEWADDENEEDAAPADIRPS-REAALEKAFPRHEEDAAIVRKDD 78

Query: 169 XXXXXXXXXXXXNKDEVRADHRRIRQAEIVSTIXXXXXXXXXXXXXXXXXXXXXXS---T 339
                       N++EVRADHRRIRQAEIVSTI                           
Sbjct: 79  RRLRRLAESRIDNREEVRADHRRIRQAEIVSTIEEEARRQEWLEFEEEDENALAERRRLI 138

Query: 340 KEKLLQREHEETQLLPVXXXXXXXXXXXXXXXXXXXXXXLTGTAREKAVFVPNSERDTIA 519
           KEKLLQRE EE                             TG A  K VFVP SERDTIA
Sbjct: 139 KEKLLQREQEEALPQEEEEEEEEEEEEEESEYETDSDEEYTGVAMVKPVFVPKSERDTIA 198


Top