BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00037160
         (394 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAC87848.1| thylakoid structural protein [Coptis laciniata]       285   3e-75
gb|AEP25245.1| chlorophyll-A binding protein P5 [Frankenia pulve...   283   1e-74
gb|AEI27527.1| photosystem II CP47 chlorophyll apoprotein [Ulmus...   283   1e-74
ref|YP_004021176.1| photosystem II CP47 chlorophyll apoprotein [...   283   1e-74
gb|ABV65696.1| photosystem II CP47 chlorophyll apoprotein, parti...   283   1e-74

>emb|CAC87848.1| thylakoid structural protein [Coptis laciniata]
          Length = 451

 Score =  285 bits (729), Expect = 3e-75
 Identities = 131/131 (100%), Positives = 131/131 (100%)
 Frame = +1

Query: 1   PGIWSYEGVAGAHILFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSG 180
           PGIWSYEGVAGAHILFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSG
Sbjct: 78  PGIWSYEGVAGAHILFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSG 137

Query: 181 LACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHIAAGT 360
           LACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHIAAGT
Sbjct: 138 LACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHIAAGT 197

Query: 361 LGILAGLFHLS 393
           LGILAGLFHLS
Sbjct: 198 LGILAGLFHLS 208


>gb|AEP25245.1| chlorophyll-A binding protein P5 [Frankenia pulverulenta]
          Length = 459

 Score =  283 bits (723), Expect = 1e-74
 Identities = 129/131 (98%), Positives = 131/131 (100%)
 Frame = +1

Query: 1   PGIWSYEGVAGAHILFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSG 180
           PGIWSYEGVAGAHI+FSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSG
Sbjct: 39  PGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSG 98

Query: 181 LACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHIAAGT 360
           +ACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHIAAGT
Sbjct: 99  VACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHIAAGT 158

Query: 361 LGILAGLFHLS 393
           LGILAGLFHLS
Sbjct: 159 LGILAGLFHLS 169


>gb|AEI27527.1| photosystem II CP47 chlorophyll apoprotein [Ulmus macrocarpa]
          Length = 463

 Score =  283 bits (723), Expect = 1e-74
 Identities = 129/131 (98%), Positives = 131/131 (100%)
 Frame = +1

Query: 1   PGIWSYEGVAGAHILFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSG 180
           PGIWSYEGVAGAHI+FSGLCFLAAIWHWVYWDLEIF+DERTGKPSLDLPKIFGIHLFLSG
Sbjct: 43  PGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLEIFTDERTGKPSLDLPKIFGIHLFLSG 102

Query: 181 LACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHIAAGT 360
           LACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHIAAGT
Sbjct: 103 LACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHIAAGT 162

Query: 361 LGILAGLFHLS 393
           LGILAGLFHLS
Sbjct: 163 LGILAGLFHLS 173


>ref|YP_004021176.1| photosystem II CP47 chlorophyll apoprotein [Castanea mollissima]
           gi|309321546|gb|ADO65086.1| photosystem II CP47
           chlorophyll apoprotein [Castanea mollissima]
          Length = 508

 Score =  283 bits (723), Expect = 1e-74
 Identities = 129/131 (98%), Positives = 131/131 (100%)
 Frame = +1

Query: 1   PGIWSYEGVAGAHILFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSG 180
           PGIWSYEGVAGAHI+FSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSG
Sbjct: 88  PGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSG 147

Query: 181 LACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHIAAGT 360
           LACFGFGAFHVTGLYGPGIWVSDPYGLTG+VQSVNPAWGVEGFDPFVPGGIASHHIAAGT
Sbjct: 148 LACFGFGAFHVTGLYGPGIWVSDPYGLTGRVQSVNPAWGVEGFDPFVPGGIASHHIAAGT 207

Query: 361 LGILAGLFHLS 393
           LGILAGLFHLS
Sbjct: 208 LGILAGLFHLS 218


>gb|ABV65696.1| photosystem II CP47 chlorophyll apoprotein, partial (chloroplast)
           [Zelkova serrata]
          Length = 474

 Score =  283 bits (723), Expect = 1e-74
 Identities = 129/131 (98%), Positives = 131/131 (100%)
 Frame = +1

Query: 1   PGIWSYEGVAGAHILFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSG 180
           PGIWSYEGVAGAHI+FSGLCFLAAIWHWVYWDLEIF+DERTGKPSLDLPKIFGIHLFLSG
Sbjct: 54  PGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLEIFTDERTGKPSLDLPKIFGIHLFLSG 113

Query: 181 LACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHIAAGT 360
           LACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHIAAGT
Sbjct: 114 LACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHIAAGT 173

Query: 361 LGILAGLFHLS 393
           LGILAGLFHLS
Sbjct: 174 LGILAGLFHLS 184