BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00037058
         (212 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-li...    54   2e-07
ref|XP_002520343.1| replication factor C / DNA polymerase III ga...    54   3e-07
ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [V...    54   3e-07
ref|XP_002889143.1| hypothetical protein ARALYDRAFT_476911 [Arab...    55   4e-07
ref|NP_177871.1| replication factor C subunit 3 [Arabidopsis tha...    54   6e-07

>ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
           gi|449499057|ref|XP_004160708.1| PREDICTED: replication
           factor C subunit 5-like [Cucumis sativus]
          Length = 363

 Score = 54.3 bits (129), Expect(2) = 2e-07
 Identities = 24/37 (64%), Positives = 30/37 (81%)
 Frame = -2

Query: 160 DHVNKKIPSLQTRCTQHHFAPLDTTHITERLKLVSEA 50
           +HVNK IP+LQ+RCT+  FAPLD  H+TERL+ V EA
Sbjct: 178 NHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEA 214



 Score = 25.8 bits (55), Expect(2) = 2e-07
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -1

Query: 209 QFARRRAIEKCKKNTR 162
           QFA RR IEK  KNTR
Sbjct: 157 QFALRRVIEKYTKNTR 172


>ref|XP_002520343.1| replication factor C / DNA polymerase III gamma-tau subunit,
           putative [Ricinus communis] gi|223540562|gb|EEF42129.1|
           replication factor C / DNA polymerase III gamma-tau
           subunit, putative [Ricinus communis]
          Length = 360

 Score = 53.5 bits (127), Expect(2) = 3e-07
 Identities = 24/37 (64%), Positives = 30/37 (81%)
 Frame = -2

Query: 160 DHVNKKIPSLQTRCTQHHFAPLDTTHITERLKLVSEA 50
           +HVNK IP+LQ+RCT+  FAPLD  H+T+RLK V EA
Sbjct: 175 NHVNKIIPALQSRCTRFRFAPLDPIHVTDRLKHVIEA 211



 Score = 25.8 bits (55), Expect(2) = 3e-07
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -1

Query: 209 QFARRRAIEKCKKNTR 162
           QFA RR IEK  KNTR
Sbjct: 154 QFALRRVIEKYTKNTR 169


>ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [Vitis vinifera]
           gi|302141794|emb|CBI18997.3| unnamed protein product
           [Vitis vinifera]
          Length = 360

 Score = 53.5 bits (127), Expect(2) = 3e-07
 Identities = 24/37 (64%), Positives = 29/37 (78%)
 Frame = -2

Query: 160 DHVNKKIPSLQTRCTQHHFAPLDTTHITERLKLVSEA 50
           +HVNK IP+LQ+RCT+  FAPLD  H+TERLK V  A
Sbjct: 175 NHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINA 211



 Score = 25.8 bits (55), Expect(2) = 3e-07
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -1

Query: 209 QFARRRAIEKCKKNTR 162
           QFA RR IEK  KNTR
Sbjct: 154 QFALRRVIEKYTKNTR 169


>ref|XP_002889143.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
           lyrata] gi|297334984|gb|EFH65402.1| hypothetical protein
           ARALYDRAFT_476911 [Arabidopsis lyrata subsp. lyrata]
          Length = 369

 Score = 55.1 bits (131), Expect(2) = 4e-07
 Identities = 24/39 (61%), Positives = 32/39 (82%)
 Frame = -2

Query: 166 LGDHVNKKIPSLQTRCTQHHFAPLDTTHITERLKLVSEA 50
           +G+HVNK IP+LQ+RCT+  FAPLD  H+++RLK V EA
Sbjct: 174 IGNHVNKIIPALQSRCTRFRFAPLDPLHVSQRLKHVIEA 212



 Score = 23.9 bits (50), Expect(2) = 4e-07
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 209 QFARRRAIEKCKKNTR 162
           QFA RR IEK  K+TR
Sbjct: 155 QFALRRVIEKYTKSTR 170


>ref|NP_177871.1| replication factor C subunit 3 [Arabidopsis thaliana]
           gi|12323400|gb|AAG51681.1|AC010704_25 putative
           replication factor C; 24844-22715 [Arabidopsis thaliana]
           gi|17529332|gb|AAL38893.1| putative replication factor C
           [Arabidopsis thaliana] gi|21436375|gb|AAM51357.1|
           putative replication factor C [Arabidopsis thaliana]
           gi|332197861|gb|AEE35982.1| replication factor C subunit
           3 [Arabidopsis thaliana]
          Length = 369

 Score = 54.3 bits (129), Expect(2) = 6e-07
 Identities = 24/39 (61%), Positives = 32/39 (82%)
 Frame = -2

Query: 166 LGDHVNKKIPSLQTRCTQHHFAPLDTTHITERLKLVSEA 50
           +G+HVNK IP+LQ+RCT+  FAPLD  H+++RLK V EA
Sbjct: 174 IGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEA 212



 Score = 23.9 bits (50), Expect(2) = 6e-07
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 209 QFARRRAIEKCKKNTR 162
           QFA RR IEK  K+TR
Sbjct: 155 QFALRRVIEKYTKSTR 170