BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00036485
         (715 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containi...   281   9e-74
ref|XP_002320827.1| predicted protein [Populus trichocarpa] gi|2...   258   1e-66
ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containi...   240   2e-61
ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containi...   239   4e-61
ref|XP_002878387.1| pentatricopeptide repeat-containing protein ...   207   1e-51

>ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
           gi|297745328|emb|CBI40408.3| unnamed protein product
           [Vitis vinifera]
          Length = 765

 Score =  281 bits (719), Expect = 9e-74
 Identities = 137/238 (57%), Positives = 180/238 (75%)
 Frame = +2

Query: 2   LGRSGNVEHAWDLVHVLMKMSAPLEASCFNALLTGVGLESQFEKMNLLVSEMKEKGIKPD 181
           L RSG  + AWD++H LMK+   +EA+  NALLT +G   +F++MN L++EMKE  I+P+
Sbjct: 280 LCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPN 339

Query: 182 GITFGIRILYLCKSRRLGQAMEVLESMKKEKENGGASVVPDLIAYNTVIKGLCQVGRQEE 361
            +TFGI I +LCK RR+ +A+EV E M   + NG   V PD+I YNT+I GLC+VGRQEE
Sbjct: 340 VVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFL-VEPDVITYNTLIDGLCKVGRQEE 398

Query: 362 GLVLVDKMISEHGYAANTITYNCLLDGFCKAGEIDRLRELFDQVNTEGVPADVITLNILV 541
           GL LV++M S+     NT+TYNCL+DG+CKA  I+  RELFDQ+N +GVP +V+TLN LV
Sbjct: 399 GLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLV 458

Query: 542 DGMCKHGRISSAFEFFNDMQKKGLNANAITYTSLISAFCNVNNLDKATAMFDLMVSSG 715
           DGMCKHGRI+ A EFFN+MQ KGL  NA+TYT+LI AFCNVNN++KA  +FD M+ +G
Sbjct: 459 DGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAG 516



 Score =  120 bits (301), Expect = 3e-25
 Identities = 66/230 (28%), Positives = 118/230 (51%), Gaps = 1/230 (0%)
 Frame = +2

Query: 17   NVEHAWDLVHVLMKMSAPLEASCFNALLTGVGLESQFEKMNLLVSEMKEKGIKPDGITFG 196
            N+E A +L   +++     +A  +  L++G+    + ++ + ++S+MKE G  PD ++F 
Sbjct: 501  NIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFN 560

Query: 197  IRILYLCKSRRLGQAMEVLESMKKEKENGGASVVPDLIAYNTVIKGLCQVGRQEEGLVLV 376
            + I   C+  +L +A E+L    KE EN G  + PD + YNT+I    + G       L+
Sbjct: 561  VLINGFCRKNKLDEAYEML----KEMENAG--IKPDGVTYNTLISHFSKTGDFSTAHRLM 614

Query: 377  DKMISEHGYAANTITYNCLLDGFCKAGEIDRLRELF-DQVNTEGVPADVITLNILVDGMC 553
             KM+ E G     +TY  L+  +C  G +D   ++F D  +T  VP + +  NIL++ +C
Sbjct: 615  KKMVKE-GLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLC 673

Query: 554  KHGRISSAFEFFNDMQKKGLNANAITYTSLISAFCNVNNLDKATAMFDLM 703
            +  ++  A    +DM+ KG+  N  T+ ++       N L KA  + D M
Sbjct: 674  RKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRM 723



 Score =  117 bits (293), Expect = 2e-24
 Identities = 68/235 (28%), Positives = 117/235 (49%)
 Frame = +2

Query: 8    RSGNVEHAWDLVHVLMKMSAPLEASCFNALLTGVGLESQFEKMNLLVSEMKEKGIKPDGI 187
            ++  +E A +L   + K   P      N L+ G+    +        +EM+ KG+K + +
Sbjct: 428  KASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAV 487

Query: 188  TFGIRILYLCKSRRLGQAMEVLESMKKEKENGGASVVPDLIAYNTVIKGLCQVGRQEEGL 367
            T+   I   C    + +AME+ + M +      A   PD I Y T+I GL Q G+ +   
Sbjct: 488  TYTALIRAFCNVNNIEKAMELFDEMLE------AGCSPDAIVYYTLISGLSQAGKLDRAS 541

Query: 368  VLVDKMISEHGYAANTITYNCLLDGFCKAGEIDRLRELFDQVNTEGVPADVITLNILVDG 547
             ++ KM  E G++ + +++N L++GFC+  ++D   E+  ++   G+  D +T N L+  
Sbjct: 542  FVLSKM-KEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISH 600

Query: 548  MCKHGRISSAFEFFNDMQKKGLNANAITYTSLISAFCNVNNLDKATAMFDLMVSS 712
              K G  S+A      M K+GL    +TY +LI A+C   NLD+A  +F  M S+
Sbjct: 601  FSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSST 655



 Score =  110 bits (274), Expect = 4e-22
 Identities = 56/210 (26%), Positives = 103/210 (49%)
 Frame = +2

Query: 86   FNALLTGVGLESQFEKMNLLVSEMKEKGIKPDGITFGIRILYLCKSRRLGQAMEVLESMK 265
            +N L+ G    S  E    L  +M + G+ P+ +T    +  +CK  R+  A+E    M+
Sbjct: 419  YNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQ 478

Query: 266  KEKENGGASVVPDLIAYNTVIKGLCQVGRQEEGLVLVDKMISEHGYAANTITYNCLLDGF 445
             +   G A      + Y  +I+  C V   E+ + L D+M+ E G + + I Y  L+ G 
Sbjct: 479  GKGLKGNA------VTYTALIRAFCNVNNIEKAMELFDEML-EAGCSPDAIVYYTLISGL 531

Query: 446  CKAGEIDRLRELFDQVNTEGVPADVITLNILVDGMCKHGRISSAFEFFNDMQKKGLNANA 625
             +AG++DR   +  ++   G   D+++ N+L++G C+  ++  A+E   +M+  G+  + 
Sbjct: 532  SQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDG 591

Query: 626  ITYTSLISAFCNVNNLDKATAMFDLMVSSG 715
            +TY +LIS F    +   A  +   MV  G
Sbjct: 592  VTYNTLISHFSKTGDFSTAHRLMKKMVKEG 621



 Score = 95.5 bits (236), Expect = 1e-17
 Identities = 53/210 (25%), Positives = 101/210 (48%)
 Frame = +2

Query: 2    LGRSGNVEHAWDLVHVLMKMSAPLEASCFNALLTGVGLESQFEKMNLLVSEMKEKGIKPD 181
            L ++G ++ A  ++  + +     +   FN L+ G   +++ ++   ++ EM+  GIKPD
Sbjct: 531  LSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPD 590

Query: 182  GITFGIRILYLCKSRRLGQAMEVLESMKKEKENGGASVVPDLIAYNTVIKGLCQVGRQEE 361
            G+T+   I +  K+     A  +++ M KE       +VP ++ Y  +I   C  G  +E
Sbjct: 591  GVTYNTLISHFSKTGDFSTAHRLMKKMVKE------GLVPTVVTYGALIHAYCLNGNLDE 644

Query: 362  GLVLVDKMISEHGYAANTITYNCLLDGFCKAGEIDRLRELFDQVNTEGVPADVITLNILV 541
             + +   M S      NT+ YN L++  C+  ++D    L D +  +GV  +  T N + 
Sbjct: 645  AMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMF 704

Query: 542  DGMCKHGRISSAFEFFNDMQKKGLNANAIT 631
             G+ +   +S AFE  + M +   N + IT
Sbjct: 705  KGLQEKNWLSKAFELMDRMTEHACNPDYIT 734


>ref|XP_002320827.1| predicted protein [Populus trichocarpa] gi|222861600|gb|EEE99142.1|
           predicted protein [Populus trichocarpa]
          Length = 775

 Score =  258 bits (658), Expect = 1e-66
 Identities = 125/240 (52%), Positives = 177/240 (73%), Gaps = 2/240 (0%)
 Frame = +2

Query: 2   LGRSGNVEHAWDLVHVLMKMSAPLEASCFNALLTGVGLESQFEKMNLLVSEMKEKGIKPD 181
           L R+      WDL   ++K+ A LE++  N+LLTG+  E  F +MN L+ +M E  I+P+
Sbjct: 280 LCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQPN 339

Query: 182 GITFGIRILYLCKSRRLGQAMEVLESMKKEKENGG--ASVVPDLIAYNTVIKGLCQVGRQ 355
            +TFGI I ++CK RR+  A+EVLE M   KE+GG   SV PD++ YNT+I GLC+VGRQ
Sbjct: 340 VVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQ 399

Query: 356 EEGLVLVDKMISEHGYAANTITYNCLLDGFCKAGEIDRLRELFDQVNTEGVPADVITLNI 535
           +EGL L+++M S+ G A +TITYNCL+DGFCKAGEI++ +ELFD++N EGV  +V+T+N 
Sbjct: 400 QEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNT 459

Query: 536 LVDGMCKHGRISSAFEFFNDMQKKGLNANAITYTSLISAFCNVNNLDKATAMFDLMVSSG 715
           LV GMC+ GR+SSA  FF + Q++G+  +A+TYT+LI+AFCNVNN +KA  +F+ M+ SG
Sbjct: 460 LVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSG 519



 Score =  100 bits (250), Expect = 2e-19
 Identities = 58/231 (25%), Positives = 112/231 (48%), Gaps = 1/231 (0%)
 Frame = +2

Query: 17   NVEHAWDLVHVLMKMSAPLEASCFNALLTGVGLESQFEKMNLLVSEMKEKGIKPDGITFG 196
            N E A +L + ++K     +A  +  L++G     +    + +++E+K+ GI+PD + + 
Sbjct: 504  NFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYN 563

Query: 197  IRILYLCKSRRLGQAMEVLESMKKEKENGGASVVPDLIAYNTVIKGLCQVGRQEEGLVLV 376
              I   C++ +  +  E+L+ M++      A + PD I YNT+I    + G  +    ++
Sbjct: 564  TLIGGFCRTNKFHRVFEMLKEMEE------AGLKPDTITYNTLIAYASKNGDLKFAQKVM 617

Query: 377  DKMISEHGYAANTITYNCLLDGFCKAGEIDRLRELF-DQVNTEGVPADVITLNILVDGMC 553
             KMI   G      TY  +++ +C  G  +   E+F D      VP + +  NIL++ +C
Sbjct: 618  RKMIKA-GVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLC 676

Query: 554  KHGRISSAFEFFNDMQKKGLNANAITYTSLISAFCNVNNLDKATAMFDLMV 706
            K+ ++ SA     DM+  G+  N  TY ++     +  +L+K     D M+
Sbjct: 677  KNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMI 727



 Score = 95.1 bits (235), Expect = 1e-17
 Identities = 63/230 (27%), Positives = 104/230 (45%), Gaps = 3/230 (1%)
 Frame = +2

Query: 8    RSGNVEHAWDLVHVLMKMSAPLEASCFNALLTGVGLESQFEKMNLLVSEMKEKGIKPDGI 187
            ++G +  A  ++  L K+    +  C+N L+ G    ++F ++  ++ EM+E G+KPD I
Sbjct: 536  QAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTI 595

Query: 188  TFGIRILYLCKSRRLGQAMEVLESMKKEKENGGASVVPDLIAYNTVIKGLCQVGRQEEGL 367
            T+   I Y  K+  L  A +V+  M K      A VVP +  Y  VI   C  G   E +
Sbjct: 596  TYNTLIAYASKNGDLKFAQKVMRKMIK------AGVVPTVATYGAVINAYCLNGNGNEAM 649

Query: 368  VLVDKMISEHGYAANTITYNCLLDGFCKAGEIDRLRELFDQVNTEGVPADVITLNILVDG 547
             +   M +      NT+ YN L++  CK  ++     L + +   GV  +  T N +  G
Sbjct: 650  EIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKG 709

Query: 548  MCKHGRISSAFEFFNDMQKKGLNANAIT---YTSLISAFCNVNNLDKATA 688
            +     +   FEF + M +   N + IT    T  +SA   +  L K  A
Sbjct: 710  LRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGEIERLKKFVA 759



 Score = 93.6 bits (231), Expect = 4e-17
 Identities = 61/229 (26%), Positives = 105/229 (45%)
 Frame = +2

Query: 8    RSGNVEHAWDLVHVLMKMSAPLEASCFNALLTGVGLESQFEKMNLLVSEMKEKGIKPDGI 187
            ++G +E   +L   + K          N L+ G+    +         E + +G+K D +
Sbjct: 431  KAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAV 490

Query: 188  TFGIRILYLCKSRRLGQAMEVLESMKKEKENGGASVVPDLIAYNTVIKGLCQVGRQEEGL 367
            T+   I   C      +AME+   M K     G S  PD I Y T+I G  Q GR  +  
Sbjct: 491  TYTALINAFCNVNNFEKAMELFNEMLKS----GCS--PDAIVYYTLISGFSQAGRMADAS 544

Query: 368  VLVDKMISEHGYAANTITYNCLLDGFCKAGEIDRLRELFDQVNTEGVPADVITLNILVDG 547
             ++ ++  + G   +T+ YN L+ GFC+  +  R+ E+  ++   G+  D IT N L+  
Sbjct: 545  FVLAEL-KKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAY 603

Query: 548  MCKHGRISSAFEFFNDMQKKGLNANAITYTSLISAFCNVNNLDKATAMF 694
              K+G +  A +    M K G+     TY ++I+A+C   N ++A  +F
Sbjct: 604  ASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIF 652



 Score = 90.5 bits (223), Expect = 3e-16
 Identities = 51/210 (24%), Positives = 97/210 (46%)
 Frame = +2

Query: 86   FNALLTGVGLESQFEKMNLLVSEMKEKGIKPDGITFGIRILYLCKSRRLGQAMEVLESMK 265
            +N L+ G     + EK   L  EM ++G+ P+ +T    +  +C++ R+  A+      +
Sbjct: 422  YNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQ 481

Query: 266  KEKENGGASVVPDLIAYNTVIKGLCQVGRQEEGLVLVDKMISEHGYAANTITYNCLLDGF 445
            +    G      D + Y  +I   C V   E+ + L ++M+   G + + I Y  L+ GF
Sbjct: 482  RRGMKG------DAVTYTALINAFCNVNNFEKAMELFNEMLKS-GCSPDAIVYYTLISGF 534

Query: 446  CKAGEIDRLRELFDQVNTEGVPADVITLNILVDGMCKHGRISSAFEFFNDMQKKGLNANA 625
             +AG +     +  ++   G+  D +  N L+ G C+  +    FE   +M++ GL  + 
Sbjct: 535  SQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDT 594

Query: 626  ITYTSLISAFCNVNNLDKATAMFDLMVSSG 715
            ITY +LI+      +L  A  +   M+ +G
Sbjct: 595  ITYNTLIAYASKNGDLKFAQKVMRKMIKAG 624


>ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
           gi|449475521|ref|XP_004154479.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
          Length = 660

 Score =  240 bits (612), Expect = 2e-61
 Identities = 124/238 (52%), Positives = 163/238 (68%)
 Frame = +2

Query: 2   LGRSGNVEHAWDLVHVLMKMSAPLEASCFNALLTGVGLESQFEKMNLLVSEMKEKGIKPD 181
           L RSGN   AW+++  LM ++   +A+  NALLTG+G   +F KMNLL+ +MK+  I+P 
Sbjct: 127 LCRSGNTNLAWNILDNLMMLNGLKDAAPCNALLTGLGKAREFGKMNLLMRKMKDMNIQPT 186

Query: 182 GITFGIRILYLCKSRRLGQAMEVLESMKKEKENGGASVVPDLIAYNTVIKGLCQVGRQEE 361
            ITFGI I +LCK RR+  A+EV E MK EKE     V PD I YNT+I GLC+VGRQEE
Sbjct: 187 VITFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFVAPDTIMYNTLIDGLCKVGRQEE 246

Query: 362 GLVLVDKMISEHGYAANTITYNCLLDGFCKAGEIDRLRELFDQVNTEGVPADVITLNILV 541
            L L+ KM S+   A  T T+NCL++G+C++GEI+   +LF+++    +  +VITLN LV
Sbjct: 247 ALCLMGKMRSDQ-CAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQIEPNVITLNTLV 305

Query: 542 DGMCKHGRISSAFEFFNDMQKKGLNANAITYTSLISAFCNVNNLDKATAMFDLMVSSG 715
           DGMCKH RIS+A EFF  MQ+KGL  N +TYT  I+AFCNVNN++KA    D M   G
Sbjct: 306 DGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDG 363



 Score =  114 bits (285), Expect = 2e-23
 Identities = 66/232 (28%), Positives = 113/232 (48%), Gaps = 2/232 (0%)
 Frame = +2

Query: 17   NVEHAWDLVHVLMKMSAPLEASCFNALLTGVGLESQFEKMNLLVSEMKEKGIKPDGITFG 196
            N+  A + +  + K     +A  +  L+ G+    + +  + +VS++KE G   D + + 
Sbjct: 348  NMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYN 407

Query: 197  IRILYLCKSRRLGQAMEVLESMKKEKENGGASVVPDLIAYNTVIKGLCQVGRQEEGLVLV 376
            + I   CK  +L +A E L  M+       A V PD + YNT+I    ++G  +     +
Sbjct: 408  VLISEFCKKNKLDRAQEWLNEMEL------AGVKPDSVTYNTLISYFSKIGNFKLAHKFM 461

Query: 377  DKMISEHGYAANTITYNCLLDGFCKAGEIDRLRELFDQVNTEG--VPADVITLNILVDGM 550
             KM  E G +    TY  L+  +C    ID   ++F ++N     VP + +  NIL+D +
Sbjct: 462  KKMTEEEGLSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNNVASKVPPNTVIYNILIDSL 521

Query: 551  CKHGRISSAFEFFNDMQKKGLNANAITYTSLISAFCNVNNLDKATAMFDLMV 706
            CK  +++ A    +DM+ +G+  N  TY S+  A  + N LDKA  + D MV
Sbjct: 522  CKQTQVNFALSLLDDMKFRGVMPNTTTYNSIFKALRDKNWLDKAFKLMDRMV 573



 Score = 94.7 bits (234), Expect = 2e-17
 Identities = 57/227 (25%), Positives = 103/227 (45%)
 Frame = +2

Query: 2   LGRSGNVEHAWDLVHVLMKMSAPLEASCFNALLTGVGLESQFEKMNLLVSEMKEKGIKPD 181
           L + G  E A  L+  +         + FN L+ G     + E  + L +EM+   I+P+
Sbjct: 238 LCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQIEPN 297

Query: 182 GITFGIRILYLCKSRRLGQAMEVLESMKKEKENGGASVVPDLIAYNTVIKGLCQVGRQEE 361
            IT    +  +CK  R+  A+E    M+++   G        + Y   I   C V    +
Sbjct: 298 VITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNN------VTYTVFINAFCNVNNMNK 351

Query: 362 GLVLVDKMISEHGYAANTITYNCLLDGFCKAGEIDRLRELFDQVNTEGVPADVITLNILV 541
            +  +D+M S+ G   + + Y  L+ G  +AG +D    +  ++   G   D +  N+L+
Sbjct: 352 AMEFLDEM-SKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLI 410

Query: 542 DGMCKHGRISSAFEFFNDMQKKGLNANAITYTSLISAFCNVNNLDKA 682
              CK  ++  A E+ N+M+  G+  +++TY +LIS F  + N   A
Sbjct: 411 SEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNTLISYFSKIGNFKLA 457



 Score = 82.0 bits (201), Expect = 1e-13
 Identities = 58/232 (25%), Positives = 105/232 (45%), Gaps = 4/232 (1%)
 Frame = +2

Query: 2    LGRSGNVEHAWDLVHVLMKMSAPLEASCFNALLTGVGLESQFEKMNLLVSEMKEKGIKPD 181
            L ++G ++ A  +V  L +    L+  C+N L++    +++ ++    ++EM+  G+KPD
Sbjct: 378  LAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPD 437

Query: 182  GITFGIRILYLCKSRRLGQAMEVLESMKKEKENGGASVVPDLIAYNTVIKGLCQVGRQEE 361
             +T+   I Y  K   +G      + MKK  E  G S  P +  Y  +I   C     +E
Sbjct: 438  SVTYNTLISYFSK---IGNFKLAHKFMKKMTEEEGLS--PTVFTYGALIHAYCLNNNIDE 492

Query: 362  GLVLVDKMIS-EHGYAANTITYNCLLDGFCKAGEIDRLRELFDQVNTEGVPADVITLNIL 538
             + +  +M +       NT+ YN L+D  CK  +++    L D +   GV  +  T N +
Sbjct: 493  AIKIFKEMNNVASKVPPNTVIYNILIDSLCKQTQVNFALSLLDDMKFRGVMPNTTTYNSI 552

Query: 539  VDGMCKHGRISSAFEFFNDMQKKGLNANAIT---YTSLISAFCNVNNLDKAT 685
               +     +  AF+  + M ++  N + IT    T  +SA   +  L K T
Sbjct: 553  FKALRDKNWLDKAFKLMDRMVEQACNPDYITMEILTEWLSAVGEITKLKKFT 604



 Score = 65.5 bits (158), Expect = 1e-08
 Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 15/251 (5%)
 Frame = +2

Query: 2   LGRSGNVEHAWDLVHVLMK--MSAPLEASCFNALLTGVGLESQFEKMNLLVSEMKEKGIK 175
           LGR G V+ A      L     +  +     N LL    +++    ++ ++  + E   +
Sbjct: 16  LGRIGMVDEALAAFSTLDSHAKNTNVRNEIINLLLKSGRVDNAMNVLDEML--LPESEFR 73

Query: 176 PDGITFGIRILYLCKSRRLGQAMEVLESMKKEKENGGA-------SVVPDLIAYNTVIKG 334
           P+  T GI    L K       ++ LE   KE E  G        ++ PD IA   +I  
Sbjct: 74  PNDKTAGIVFNNLLK-------IDGLEGRVKEDEIAGLVSKFGKHNIFPDTIALTQLISK 126

Query: 335 LCQVGRQEEGLVLVDKMISEHGYAANTITYNCLLDGFCKAGEIDRLRELFDQVNTEGVPA 514
           LC+ G       ++D ++  +G   +    N LL G  KA E  ++  L  ++    +  
Sbjct: 127 LCRSGNTNLAWNILDNLMMLNG-LKDAAPCNALLTGLGKAREFGKMNLLMRKMKDMNIQP 185

Query: 515 DVITLNILVDGMCKHGRISSAFEFFNDMQ------KKGLNANAITYTSLISAFCNVNNLD 676
            VIT  IL++ +CK  RI  A E F  M+      K  +  + I Y +LI   C V   +
Sbjct: 186 TVITFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFVAPDTIMYNTLIDGLCKVGRQE 245

Query: 677 KATAMFDLMVS 709
           +A  +   M S
Sbjct: 246 EALCLMGKMRS 256


>ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score =  239 bits (610), Expect = 4e-61
 Identities = 111/229 (48%), Positives = 168/229 (73%)
 Frame = +2

Query: 29  AWDLVHVLMKMSAPLEASCFNALLTGVGLESQFEKMNLLVSEMKEKGIKPDGITFGIRIL 208
           AW+++H +M++   ++A+  NALLT +G     ++MN L++EM+++ I+P  +TFGI + 
Sbjct: 265 AWEVLHCVMRLGGAVDAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVN 324

Query: 209 YLCKSRRLGQAMEVLESMKKEKENGGASVVPDLIAYNTVIKGLCQVGRQEEGLVLVDKMI 388
           +LCK+RR+ +A++V + ++ +  +    V PD++ +NT+I GLC+VG++E+GL L+++M 
Sbjct: 325 HLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMK 384

Query: 389 SEHGYAANTITYNCLLDGFCKAGEIDRLRELFDQVNTEGVPADVITLNILVDGMCKHGRI 568
             +    NT+TYNCL+DGF KAG  DR  ELF Q+N EGV  +VITLN LVDG+CKHGR+
Sbjct: 385 MGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRV 444

Query: 569 SSAFEFFNDMQKKGLNANAITYTSLISAFCNVNNLDKATAMFDLMVSSG 715
             A EFFN+M+ KGL  NA TYT+LISAFC VNN+++A   F+ M+SSG
Sbjct: 445 HRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSG 493



 Score =  117 bits (294), Expect = 2e-24
 Identities = 69/235 (29%), Positives = 119/235 (50%)
 Frame = +2

Query: 8    RSGNVEHAWDLVHVLMKMSAPLEASCFNALLTGVGLESQFEKMNLLVSEMKEKGIKPDGI 187
            ++GN + A +L   + +          N L+ G+    +  +     +EMK KG+K +  
Sbjct: 405  KAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAA 464

Query: 188  TFGIRILYLCKSRRLGQAMEVLESMKKEKENGGASVVPDLIAYNTVIKGLCQVGRQEEGL 367
            T+   I   C    + +AM+  E M     + G S  PD + Y ++I GLC  GR  +  
Sbjct: 465  TYTALISAFCGVNNINRAMQCFEEML----SSGCS--PDAVVYYSLISGLCIAGRMNDAS 518

Query: 368  VLVDKMISEHGYAANTITYNCLLDGFCKAGEIDRLRELFDQVNTEGVPADVITLNILVDG 547
            V+V K+    G++ +   YN L+ GFCK  +++R+ EL  ++   GV  D IT N L+  
Sbjct: 519  VVVSKL-KLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISY 577

Query: 548  MCKHGRISSAFEFFNDMQKKGLNANAITYTSLISAFCNVNNLDKATAMFDLMVSS 712
            + K G  ++A +    M K+GL  + +TY ++I A+C+  N+D+   +F  M S+
Sbjct: 578  LGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCST 632



 Score =  106 bits (265), Expect = 4e-21
 Identities = 62/223 (27%), Positives = 108/223 (48%)
 Frame = +2

Query: 11   SGNVEHAWDLVHVLMKMSAPLEASCFNALLTGVGLESQFEKMNLLVSEMKEKGIKPDGIT 190
            +G +  A  +V  L      L+ SC+N L++G   + + E++  L++EM+E G+KPD IT
Sbjct: 511  AGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTIT 570

Query: 191  FGIRILYLCKSRRLGQAMEVLESMKKEKENGGASVVPDLIAYNTVIKGLCQVGRQEEGLV 370
            +   I YL K+     A +V+E M KE       + P ++ Y  +I   C     +EG+ 
Sbjct: 571  YNTLISYLGKTGDFATASKVMEKMIKE------GLRPSVVTYGAIIHAYCSKKNVDEGMK 624

Query: 371  LVDKMISEHGYAANTITYNCLLDGFCKAGEIDRLRELFDQVNTEGVPADVITLNILVDGM 550
            +  +M S      NT+ YN L+D  C+  ++DR   L + +  + V  +  T N ++ G+
Sbjct: 625  IFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGV 684

Query: 551  CKHGRISSAFEFFNDMQKKGLNANAITYTSLISAFCNVNNLDK 679
                 +  AFE  + M ++    + IT   L      V  ++K
Sbjct: 685  RDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWLSAVGEIEK 727



 Score =  102 bits (253), Expect = 1e-19
 Identities = 58/231 (25%), Positives = 112/231 (48%), Gaps = 1/231 (0%)
 Frame = +2

Query: 17   NVEHAWDLVHVLMKMSAPLEASCFNALLTGVGLESQFEKMNLLVSEMKEKGIKPDGITFG 196
            N+  A      ++      +A  + +L++G+ +  +    +++VS++K  G   D   + 
Sbjct: 478  NINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYN 537

Query: 197  IRILYLCKSRRLGQAMEVLESMKKEKENGGASVVPDLIAYNTVIKGLCQVGRQEEGLVLV 376
            + I   CK ++L +  E+L  M++        V PD I YNT+I  L + G       ++
Sbjct: 538  VLISGFCKKKKLERVYELLTEMEE------TGVKPDTITYNTLISYLGKTGDFATASKVM 591

Query: 377  DKMISEHGYAANTITYNCLLDGFCKAGEIDRLRELFDQV-NTEGVPADVITLNILVDGMC 553
            +KMI E G   + +TY  ++  +C    +D   ++F ++ +T  VP + +  NIL+D +C
Sbjct: 592  EKMIKE-GLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALC 650

Query: 554  KHGRISSAFEFFNDMQKKGLNANAITYTSLISAFCNVNNLDKATAMFDLMV 706
            ++  +  A     DM+ K +  N  TY +++    +   L KA  + D MV
Sbjct: 651  RNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMV 701



 Score = 96.3 bits (238), Expect = 6e-18
 Identities = 53/210 (25%), Positives = 99/210 (47%)
 Frame = +2

Query: 86   FNALLTGVGLESQFEKMNLLVSEMKEKGIKPDGITFGIRILYLCKSRRLGQAMEVLESMK 265
            +N L+ G      F++ + L  +M E+G++P+ IT    +  LCK  R+ +A+E    MK
Sbjct: 396  YNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMK 455

Query: 266  KEKENGGASVVPDLIAYNTVIKGLCQVGRQEEGLVLVDKMISEHGYAANTITYNCLLDGF 445
             +   G A+       Y  +I   C V      +   ++M+S  G + + + Y  L+ G 
Sbjct: 456  GKGLKGNAAT------YTALISAFCGVNNINRAMQCFEEMLSS-GCSPDAVVYYSLISGL 508

Query: 446  CKAGEIDRLRELFDQVNTEGVPADVITLNILVDGMCKHGRISSAFEFFNDMQKKGLNANA 625
            C AG ++    +  ++   G   D    N+L+ G CK  ++   +E   +M++ G+  + 
Sbjct: 509  CIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDT 568

Query: 626  ITYTSLISAFCNVNNLDKATAMFDLMVSSG 715
            ITY +LIS      +   A+ + + M+  G
Sbjct: 569  ITYNTLISYLGKTGDFATASKVMEKMIKEG 598


>ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297324225|gb|EFH54646.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 766

 Score =  207 bits (528), Expect = 1e-51
 Identities = 101/238 (42%), Positives = 156/238 (65%)
 Frame = +2

Query: 2   LGRSGNVEHAWDLVHVLMKMSAPLEASCFNALLTGVGLESQFEKMNLLVSEMKEKGIKPD 181
           L ++     AWD++  LMK  APLEA  FNALL+ +G      +MN LV +M E  I+PD
Sbjct: 269 LCKNARTNAAWDILSDLMKNKAPLEAPPFNALLSCLGRNMNIGRMNALVLKMDEMKIRPD 328

Query: 182 GITFGIRILYLCKSRRLGQAMEVLESMKKEKENGGASVVPDLIAYNTVIKGLCQVGRQEE 361
            +T GI I  LCKSRR+ +A++V E M  ++ + G  +  D I +NT+I GLC+VGR +E
Sbjct: 329 VVTLGILINTLCKSRRVDEALQVFEQMCGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKE 388

Query: 362 GLVLVDKMISEHGYAANTITYNCLLDGFCKAGEIDRLRELFDQVNTEGVPADVITLNILV 541
              L+ +M  E     NT+TYNCL+DG+C+AG+++  +E+  ++  +G+  DV+T+N +V
Sbjct: 389 AEELLVRMKMEERCVPNTVTYNCLIDGYCRAGKLETAKEVVSRMKEDGIKPDVVTVNTIV 448

Query: 542 DGMCKHGRISSAFEFFNDMQKKGLNANAITYTSLISAFCNVNNLDKATAMFDLMVSSG 715
            GMC+H  ++ A  FF DM+K+G+  N +TY +LI A C+++N++KA   FD M+ +G
Sbjct: 449 GGMCRHHGLNMAVLFFMDMEKEGVKGNVVTYMTLIHACCSLSNIEKAMHWFDKMLEAG 506



 Score =  100 bits (250), Expect = 2e-19
 Identities = 67/248 (27%), Positives = 106/248 (42%), Gaps = 29/248 (11%)
 Frame = +2

Query: 38   LVHVLMKMSAPLEASCFNALLTGVGLESQFEKMNLLVSEMKEKGIKPDGITFGIRILYLC 217
            LV + M+         +N L+ G     + E    +VS MKE GIKPD +T    +  +C
Sbjct: 393  LVRMKMEERCVPNTVTYNCLIDGYCRAGKLETAKEVVSRMKEDGIKPDVVTVNTIVGGMC 452

Query: 218  KSRRLGQAMEVLESMKKEKENGG-----------------------------ASVVPDLI 310
            +   L  A+     M+KE   G                              A   PD  
Sbjct: 453  RHHGLNMAVLFFMDMEKEGVKGNVVTYMTLIHACCSLSNIEKAMHWFDKMLEAGCSPDAK 512

Query: 311  AYNTVIKGLCQVGRQEEGLVLVDKMISEHGYAANTITYNCLLDGFCKAGEIDRLRELFDQ 490
             Y  +I GLCQV R  + + +V+K+  E G++ + + YN L+  FC     +++ E+   
Sbjct: 513  IYYALISGLCQVRRDHDAIRVVEKL-REGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTD 571

Query: 491  VNTEGVPADVITLNILVDGMCKHGRISSAFEFFNDMQKKGLNANAITYTSLISAFCNVNN 670
            +  EG+  D IT N L+    KH    S       M++  L+    TY ++I A+C+V  
Sbjct: 572  MEKEGMKPDSITYNTLISFFGKHKDFESVERMMEQMREDELDPTVATYGAVIEAYCSVGE 631

Query: 671  LDKATAMF 694
            L +A  +F
Sbjct: 632  LGEALKLF 639



 Score = 73.2 bits (178), Expect = 5e-11
 Identities = 50/214 (23%), Positives = 98/214 (45%)
 Frame = +2

Query: 38   LVHVLMKMSAPLEASCFNALLTGVGLESQFEKMNLLVSEMKEKGIKPDGITFGIRILYLC 217
            +V  L +    L+   +N L+     ++  EK+  ++++M+++G+KPD IT+   I +  
Sbjct: 533  VVEKLREGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGMKPDSITYNTLISFFG 592

Query: 218  KSRRLGQAMEVLESMKKEKENGGASVVPDLIAYNTVIKGLCQVGRQEEGLVLVDKMISEH 397
            K +       ++E M++++ +      P +  Y  VI+  C VG   E L L   M    
Sbjct: 593  KHKDFESVERMMEQMREDELD------PTVATYGAVIEAYCSVGELGEALKLFKDMGLRS 646

Query: 398  GYAANTITYNCLLDGFCKAGEIDRLRELFDQVNTEGVPADVITLNILVDGMCKHGRISSA 577
                NT+ YN L++ F K G   +   L +++  + V  +V T N L   + +  +  + 
Sbjct: 647  KVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLKEKNQAETL 706

Query: 578  FEFFNDMQKKGLNANAITYTSLISAFCNVNNLDK 679
             +  ++M ++    N IT   L+      + L K
Sbjct: 707  LKLMDEMVEQSCEPNQITMEILMERLSGSDELVK 740



 Score = 70.5 bits (171), Expect = 3e-10
 Identities = 51/231 (22%), Positives = 96/231 (41%), Gaps = 1/231 (0%)
 Frame = +2

Query: 17   NVEHAWDLVHVLMKMSAPLEASCFNALLTGVGLESQFEKMNLLVSEMKEKGIKPDGITFG 196
            N+E A      +++     +A  + AL++G+    +      +V +++E G   D + + 
Sbjct: 491  NIEKAMHWFDKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLREGGFSLDLLAYN 550

Query: 197  IRILYLCKSRRLGQAMEVLESMKKEKENGGASVVPDLIAYNTVIKGLCQVGRQEEGLVLV 376
            + I   C      +  E+L  M+KE       + PD I YNT+I    +  +  E +  +
Sbjct: 551  MLIGLFCDKNNAEKVYEMLTDMEKE------GMKPDSITYNTLISFFGK-HKDFESVERM 603

Query: 377  DKMISEHGYAANTITYNCLLDGFCKAGEIDRLRELFDQVNTEG-VPADVITLNILVDGMC 553
             + + E        TY  +++ +C  GE+    +LF  +     V  + +  NIL++   
Sbjct: 604  MEQMREDELDPTVATYGAVIEAYCSVGELGEALKLFKDMGLRSKVNPNTVIYNILINAFS 663

Query: 554  KHGRISSAFEFFNDMQKKGLNANAITYTSLISAFCNVNNLDKATAMFDLMV 706
            K G    A     +M+ K +  N  TY +L       N  +    + D MV
Sbjct: 664  KLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLKEKNQAETLLKLMDEMV 714



 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 40/176 (22%), Positives = 83/176 (47%)
 Frame = +2

Query: 17   NVEHAWDLVHVLMKMSAPLEASCFNALLTGVGLESQFEKMNLLVSEMKEKGIKPDGITFG 196
            N E  ++++  + K     ++  +N L++  G    FE +  ++ +M+E  + P   T+G
Sbjct: 561  NAEKVYEMLTDMEKEGMKPDSITYNTLISFFGKHKDFESVERMMEQMREDELDPTVATYG 620

Query: 197  IRILYLCKSRRLGQAMEVLESMKKEKENGGASVVPDLIAYNTVIKGLCQVGRQEEGLVLV 376
              I   C    LG+A+++ + M        + V P+ + YN +I    ++G   + L L 
Sbjct: 621  AVIEAYCSVGELGEALKLFKDMGLR-----SKVNPNTVIYNILINAFSKLGNFGQALSLK 675

Query: 377  DKMISEHGYAANTITYNCLLDGFCKAGEIDRLRELFDQVNTEGVPADVITLNILVD 544
            ++M  +     N  TYN L     +  + + L +L D++  +    + IT+ IL++
Sbjct: 676  EEMKMKM-VRPNVETYNALFKCLKEKNQAETLLKLMDEMVEQSCEPNQITMEILME 730