BLASTX nr result

ID: Coptis25_contig00036453 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00036453
         (305 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24120.3| unnamed protein product [Vitis vinifera]              142   3e-32
ref|XP_002265884.1| PREDICTED: ABC transporter D family member 2...   142   3e-32
ref|XP_002315097.1| peroxisomal membrane ABC transporter family,...   135   4e-30
ref|XP_002514370.1| peroxisomal membrane protein, putative [Rici...   134   6e-30
ref|NP_001042413.1| Os01g0218700 [Oryza sativa Japonica Group] g...   132   2e-29

>emb|CBI24120.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  142 bits (358), Expect = 3e-32
 Identities = 71/101 (70%), Positives = 77/101 (76%)
 Frame = -2

Query: 304 EKRRPDLATLLRRFWKVAAPYWSSTDXXXXXXXXXXXXXXXXXXTGISVGFSFLGRDFYN 125
           +++ PD+ TL RRFWKVAAPYW S D                  TGISVGF+FLGRDFYN
Sbjct: 60  KRKAPDIPTLFRRFWKVAAPYWWSDDKVQARLQLAAVFALTLGTTGISVGFNFLGRDFYN 119

Query: 124 ALANKDQEQFSKQLLYYLGAFAGGIPFFVLRDYARETLALR 2
           ALANKDQEQF+KQLLYYLGAFAGGIPFFVLRDYARE LALR
Sbjct: 120 ALANKDQEQFTKQLLYYLGAFAGGIPFFVLRDYAREILALR 160


>ref|XP_002265884.1| PREDICTED: ABC transporter D family member 2, chloroplastic-like
           [Vitis vinifera]
          Length = 722

 Score =  142 bits (358), Expect = 3e-32
 Identities = 71/101 (70%), Positives = 77/101 (76%)
 Frame = -2

Query: 304 EKRRPDLATLLRRFWKVAAPYWSSTDXXXXXXXXXXXXXXXXXXTGISVGFSFLGRDFYN 125
           +++ PD+ TL RRFWKVAAPYW S D                  TGISVGF+FLGRDFYN
Sbjct: 60  KRKAPDIPTLFRRFWKVAAPYWWSDDKVQARLQLAAVFALTLGTTGISVGFNFLGRDFYN 119

Query: 124 ALANKDQEQFSKQLLYYLGAFAGGIPFFVLRDYARETLALR 2
           ALANKDQEQF+KQLLYYLGAFAGGIPFFVLRDYARE LALR
Sbjct: 120 ALANKDQEQFTKQLLYYLGAFAGGIPFFVLRDYAREILALR 160


>ref|XP_002315097.1| peroxisomal membrane ABC transporter family, PMP family [Populus
           trichocarpa] gi|222864137|gb|EEF01268.1| peroxisomal
           membrane ABC transporter family, PMP family [Populus
           trichocarpa]
          Length = 651

 Score =  135 bits (339), Expect = 4e-30
 Identities = 69/97 (71%), Positives = 71/97 (73%)
 Frame = -2

Query: 292 PDLATLLRRFWKVAAPYWSSTDXXXXXXXXXXXXXXXXXXTGISVGFSFLGRDFYNALAN 113
           P L TL RRFWKVAAPYW S D                  TGISVGF+FLGRDFYNALAN
Sbjct: 3   PGLNTLFRRFWKVAAPYWFSEDKEPARLQLAAVFALTLGTTGISVGFNFLGRDFYNALAN 62

Query: 112 KDQEQFSKQLLYYLGAFAGGIPFFVLRDYARETLALR 2
           KDQEQF+KQLLYYLGAFAGGIP FVLRDYARE L LR
Sbjct: 63  KDQEQFTKQLLYYLGAFAGGIPLFVLRDYAREILGLR 99


>ref|XP_002514370.1| peroxisomal membrane protein, putative [Ricinus communis]
           gi|223546467|gb|EEF47966.1| peroxisomal membrane
           protein, putative [Ricinus communis]
          Length = 742

 Score =  134 bits (338), Expect = 6e-30
 Identities = 66/101 (65%), Positives = 75/101 (74%)
 Frame = -2

Query: 304 EKRRPDLATLLRRFWKVAAPYWSSTDXXXXXXXXXXXXXXXXXXTGISVGFSFLGRDFYN 125
           ++   ++ TL+RRFWKVAAPYW S D                  TGISVGF+FLGRDFYN
Sbjct: 85  QREATEIQTLIRRFWKVAAPYWFSDDKVQARLQLAAVFALTLATTGISVGFNFLGRDFYN 144

Query: 124 ALANKDQEQFSKQLLYYLGAFAGGIPFFVLRDYARETLALR 2
           ALANKDQ+QF+KQLLYYLG FAGGIPFFVLRDYARE L+LR
Sbjct: 145 ALANKDQDQFTKQLLYYLGGFAGGIPFFVLRDYAREILSLR 185


>ref|NP_001042413.1| Os01g0218700 [Oryza sativa Japonica Group]
           gi|56201622|dbj|BAD73069.1| putative ABC transporter Nda
           [Oryza sativa Japonica Group]
           gi|56784087|dbj|BAD81416.1| putative ABC transporter Nda
           [Oryza sativa Japonica Group]
           gi|113531944|dbj|BAF04327.1| Os01g0218700 [Oryza sativa
           Japonica Group]
          Length = 771

 Score =  132 bits (333), Expect = 2e-29
 Identities = 68/96 (70%), Positives = 72/96 (75%)
 Frame = -2

Query: 289 DLATLLRRFWKVAAPYWSSTDXXXXXXXXXXXXXXXXXXTGISVGFSFLGRDFYNALANK 110
           DL TL RRFWKVAAPYW S D                  TGISVGF+FLGRDFYNALA+K
Sbjct: 110 DLKTLARRFWKVAAPYWWSEDKVQARLRLAAVFALTLATTGISVGFNFLGRDFYNALADK 169

Query: 109 DQEQFSKQLLYYLGAFAGGIPFFVLRDYARETLALR 2
           DQEQF+KQLLYYLG FA GIPFFVLRDYARETL+LR
Sbjct: 170 DQEQFTKQLLYYLGGFAVGIPFFVLRDYARETLSLR 205


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