BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00036441
         (544 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN60374.1| hypothetical protein VITISV_001215 [Vitis vinifera]   167   1e-39
gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsi...   163   1e-38
dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis t...   162   4e-38
emb|CAN69190.1| hypothetical protein VITISV_001578 [Vitis vinifera]   161   5e-38
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha...   160   1e-37

>emb|CAN60374.1| hypothetical protein VITISV_001215 [Vitis vinifera]
          Length = 1535

 Score =  167 bits (423), Expect = 1e-39
 Identities = 87/184 (47%), Positives = 118/184 (64%), Gaps = 4/184 (2%)
 Frame = -1

Query: 541  LQSFFAMVHTQFHSKIHSLISSHDNIDDQFNEIQVF*SNNRSEFISHTMQQFFSNHEVIH 362
            ++ FF+ V TQF S                  I++F S+N  EF+S  +Q FF ++ V+ 
Sbjct: 650  IKHFFSYVSTQFAS-----------------HIKIFRSDNGGEFLS--LQSFFKDNGVLF 690

Query: 361  QRSCVATPQQN----IKHHHLLNVARVLRFQAHLPLSFWSECILTAGYLINKIPSTLLND 194
            Q SCV TPQQN     KH H+L VAR L+FQA LP  FW EC LTA ++IN++PS +L+ 
Sbjct: 691  QHSCVYTPQQNGVVERKHRHILQVARALKFQAQLPTQFWGECALTAVHIINRLPSPVLSF 750

Query: 193  KSPHELLFTSPPTLAHLRVFGCLCFAHNTSIKNKFDHRGKLDIFIGYPYAQKSYCIYDLS 14
            K+P E L+  PPT +HLRVFGCL +A N  + +KFDHR    IFIGYP  QK+Y +++LS
Sbjct: 751  KTPFERLYLKPPTYSHLRVFGCLAYATNVHVSHKFDHRAIACIFIGYPVGQKAYKLFNLS 810

Query: 13   SKKI 2
            ++KI
Sbjct: 811  TRKI 814


>gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score =  163 bits (413), Expect = 1e-38
 Identities = 86/185 (46%), Positives = 117/185 (63%), Gaps = 5/185 (2%)
 Frame = -1

Query: 544 HLQSFFAMVHTQFHSKIHSLISSHDNIDDQFNEIQVF*SNNRSEFISHTMQQFFSNHEVI 365
           HL++FFAM   QF+ KI ++ S                 +N +EF+  T  +FF    VI
Sbjct: 494 HLKNFFAMTDRQFNVKIKTVRS-----------------DNGTEFLCLT--KFFQEQGVI 534

Query: 364 HQRSCVATPQQNI----KHHHLLNVARVLRFQAHLPLSFWSECILTAGYLINKIPSTLLN 197
           H+RSCVATP++N     KH HLLNVAR LRFQA+LP+ FW EC+LTA YLIN+ PS++LN
Sbjct: 535 HERSCVATPERNDRVERKHRHLLNVARALRFQANLPIQFWGECVLTAAYLINRTPSSVLN 594

Query: 196 DKSPHELLFTSPPTLAHLRVFGCLCFAHNTSI-KNKFDHRGKLDIFIGYPYAQKSYCIYD 20
           D +P+E L    P   HLRVFG LC+AHN +   +KF  R +  +F+GYP+ QK + ++D
Sbjct: 595 DSTPYERLHKKQPRFDHLRVFGSLCYAHNRNRGGDKFAERSRRCVFVGYPHGQKGWRLFD 654

Query: 19  LSSKK 5
           L   +
Sbjct: 655 LEQNE 659


>dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1462

 Score =  162 bits (409), Expect = 4e-38
 Identities = 81/183 (44%), Positives = 114/183 (62%), Gaps = 5/183 (2%)
 Frame = -1

Query: 544  HLQSFFAMVHTQFHSKIHSLISSHDNIDDQFNEIQVF*SNNRSEFISHTMQQFFSNHEVI 365
            HL++F ++V  QF +KI ++ S                 +N +EF+   +  FF +H +I
Sbjct: 572  HLKNFISLVERQFSTKIKTIRS-----------------DNGTEFVC--LSSFFVDHGII 612

Query: 364  HQRSCVATPQQN----IKHHHLLNVARVLRFQAHLPLSFWSECILTAGYLINKIPSTLLN 197
            H+ SCV TPQQN     KH H+LNVAR LRFQA LP+ FWS C LTA YLIN+ P+ LL 
Sbjct: 613  HETSCVGTPQQNGRVERKHRHILNVARALRFQARLPIEFWSYCALTAAYLINRTPTPLLQ 672

Query: 196  DKSPHELLFTSPPTLAHLRVFGCLCFAHNTSI-KNKFDHRGKLDIFIGYPYAQKSYCIYD 20
             K+P ELL+  PP + H+RVFGC+C+ HN     +KF+ R    IF+GYP+A+K + +Y+
Sbjct: 673  GKTPFELLYNRPPPVNHIRVFGCICYVHNQKHGGDKFESRSNKSIFLGYPFAKKGWRVYN 732

Query: 19   LSS 11
              +
Sbjct: 733  FET 735


>emb|CAN69190.1| hypothetical protein VITISV_001578 [Vitis vinifera]
          Length = 1323

 Score =  161 bits (408), Expect = 5e-38
 Identities = 85/184 (46%), Positives = 115/184 (62%), Gaps = 4/184 (2%)
 Frame = -1

Query: 541 LQSFFAMVHTQFHSKIHSLISSHDNIDDQFNEIQVF*SNNRSEFISHTMQQFFSNHEVIH 362
           L+ FF  V TQF  +I                 + F S+N  EF S  ++ FF ++ VI 
Sbjct: 471 LKRFFNYVFTQFEFRI-----------------KTFRSDNGXEFTS--LRSFFQDNGVIF 511

Query: 361 QRSCVATPQQN----IKHHHLLNVARVLRFQAHLPLSFWSECILTAGYLINKIPSTLLND 194
           Q SCV TPQQN     KH H+L VAR L+F A +P  FW EC LTA ++IN++PS +L+ 
Sbjct: 512 QHSCVYTPQQNGVVERKHRHILQVARALKFHAQVPTQFWGECALTAVHIINRLPSPILSF 571

Query: 193 KSPHELLFTSPPTLAHLRVFGCLCFAHNTSIKNKFDHRGKLDIFIGYPYAQKSYCIYDLS 14
           K+P ELL++ PP+ +HLRVFGCL +A N    +KFD+R    IFIGYP  QK+Y ++DLS
Sbjct: 572 KTPFELLYSKPPSYSHLRVFGCLAYATNVHTSHKFDYRAMPSIFIGYPVGQKAYKLFDLS 631

Query: 13  SKKI 2
           +KK+
Sbjct: 632 TKKV 635


>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
          Length = 1468

 Score =  160 bits (405), Expect = 1e-37
 Identities = 81/185 (43%), Positives = 118/185 (63%), Gaps = 5/185 (2%)
 Frame = -1

Query: 544  HLQSFFAMVHTQFHSKIHSLISSHDNIDDQFNEIQVF*SNNRSEFISHTMQQFFSNHEVI 365
            HL+ F A+V  QF +                 EI++  S+N +EF+   M+++F +  + 
Sbjct: 618  HLKDFIALVERQFDT-----------------EIKIVRSDNGTEFLC--MREYFLHKGIA 658

Query: 364  HQRSCVATPQQN----IKHHHLLNVARVLRFQAHLPLSFWSECILTAGYLINKIPSTLLN 197
            H+ SCV TP QN     KH H+LN+AR LRFQ++LP+ FW ECIL+A YLIN+ PS LL 
Sbjct: 659  HETSCVGTPHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAYLINRTPSMLLQ 718

Query: 196  DKSPHELLFTSPPTLAHLRVFGCLCFAHNTSIK-NKFDHRGKLDIFIGYPYAQKSYCIYD 20
             KSP+E+L+ + P  +HLRVFG LC+AHN + K +KF  R +  +F+GYP+ QK + ++D
Sbjct: 719  GKSPYEMLYKTAPKYSHLRVFGSLCYAHNQNHKGDKFAARSRRCVFVGYPHGQKGWRLFD 778

Query: 19   LSSKK 5
            L  +K
Sbjct: 779  LEEQK 783