BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00036402
         (498 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...    82   3e-14
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...    75   6e-12
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...    73   2e-11
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    73   2e-11
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...    72   4e-11

>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 48/118 (40%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
 Frame = +3

Query: 9   KQKSRDQVVTLGDNNTKYFFNSIKVRRMTNKINCLKDEHGKAYEDLVEIGNECVKYYQEL 188
           KQKSR Q ++LGD+N+K+FF +IKVR+  NKI  L+++ G    +  EI NE   +Y+ L
Sbjct: 348 KQKSRIQWLSLGDSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICNFYRRL 407

Query: 189 YNPCVLEDLDFTELEDIQT-EQLDENTKNMLVREVTRDEIIECLANIDDDKAPGSDGF 359
                   L+  +L  ++   +L   +   LV+ +T  EI + LA+IDD KAPG DGF
Sbjct: 408 LGTS-SSQLEAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGF 464


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
 Frame = +3

Query: 9   KQKSRDQVVTLGDNNTKYFFNSIKVRRMTNKINCLKDEHGKAYEDLVEIGNECVKYYQEL 188
           +QKSR   +  GD N+K FF ++K R   N+I+ L  E G+  +D  E+  E +++Y++L
Sbjct: 345 QQKSRITWLQQGDTNSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEVQEEILEFYKKL 404

Query: 189 Y--NPCVLEDLDFTELEDIQTEQLDENTKNMLVREVTRDEIIECLANIDDDKAPGSDGF 359
                  L  +D   +     + L    K  L+REV   EI E LA I +DKAPG DGF
Sbjct: 405 LGTRASTLMGVDLNTVRG--GKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGF 461


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1524

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
 Frame = +3

Query: 9   KQKSRDQVVTLGDNNTKYFFNSIKVRRMTNKINCLKDEHGKAYEDLVEIGNECVKYYQEL 188
           KQKSR+Q +  GD NT YF    K R   N++N + D+ G+ +    EIGN    ++  +
Sbjct: 493 KQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNI 552

Query: 189 Y--NPCVLEDLDFTELEDIQTEQLDENTKNM-LVREVTRDEIIECLANIDDDKAPGSDG 356
           +  N   +  +DF + +   T     NT N+ L +E +  EI + +  I DDKAPG DG
Sbjct: 553 FSTNGIKVSPIDFADFKSTVT-----NTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDG 606


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
 Frame = +3

Query: 9    KQKSRDQVVTLGDNNTKYFFNSIKVRRMTNKINCLKDEHGKAYEDLVEIGNECVKYYQEL 188
            KQKSR+Q +  GD NT YF    K R   N++N + D+ G+ +    EIGN    ++  +
Sbjct: 719  KQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNI 778

Query: 189  Y--NPCVLEDLDFTELEDIQTEQLDENTKNM-LVREVTRDEIIECLANIDDDKAPGSDG 356
            +  N   +  +DF + +   T     NT N+ L +E +  EI + +  I DDKAPG DG
Sbjct: 779  FSTNGIKVSPIDFADFKSTVT-----NTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDG 832


>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1277

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
 Frame = +3

Query: 9   KQKSRDQVVTLGDNNTKYFFNSIKVRRMTNKINCLKDEHGKAYEDLVEIGNECVKYYQEL 188
           KQKS+   + +GD N  YF  + +VRRM N I  ++  +G   +   EI  E  +++QE 
Sbjct: 530 KQKSKLHWMKVGDRNNSYFHKAAQVRRMQNSIREIQGPNGVVLQTSEEIKGEAERFFQEF 589

Query: 189 YN--PCVLEDLDFTELEDIQTEQLDENTKNMLVREVTRDEIIECLANIDDDKAPGSDGF 359
            N  P   + +   EL+++ + +     ++ML REVT +EI + L  +  +K+PG DG+
Sbjct: 590 LNHQPSDFQGMTVEELQNLMSFRCSATDQDMLTREVTSEEIQKVLFAMPSNKSPGPDGY 648