BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00036364
         (335 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC32062.1| 20S proteasome subunit PAF1 [Arabidopsis thaliana]      59   4e-07
ref|XP_002863736.1| 20S proteasome subunit PAF1 [Arabidopsis lyr...    59   4e-07
gb|AAM61575.1| 20S proteasome subunit PAF1 [Arabidopsis thaliana]      59   4e-07
ref|NP_199093.1| proteasome subunit alpha type-1-A [Arabidopsis ...    59   4e-07
ref|NP_175158.1| proteasome subunit alpha type-1-B [Arabidopsis ...    58   7e-07

>gb|AAC32062.1| 20S proteasome subunit PAF1 [Arabidopsis thaliana]
          Length = 278

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 37/63 (58%), Positives = 43/63 (68%)
 Frame = +1

Query: 10  LLDWMHESEACL*YSCRSGDYCFEYQVFAIGSCSQASKT*SALWDSNFESFTDSSSEDLI 189
           L+  + ES A L Y+C SG+Y FEYQ FAIGS SQA+KT     +  FESF DSS EDLI
Sbjct: 133 LVGGLDESGAHLYYNCPSGNY-FEYQAFAIGSRSQAAKT---YLERRFESFGDSSREDLI 188

Query: 190 KVA 198
           K A
Sbjct: 189 KDA 191


>ref|XP_002863736.1| 20S proteasome subunit PAF1 [Arabidopsis lyrata subsp. lyrata]
           gi|297309571|gb|EFH39995.1| 20S proteasome subunit PAF1
           [Arabidopsis lyrata subsp. lyrata]
          Length = 276

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 37/63 (58%), Positives = 43/63 (68%)
 Frame = +1

Query: 10  LLDWMHESEACL*YSCRSGDYCFEYQVFAIGSCSQASKT*SALWDSNFESFTDSSSEDLI 189
           L+  + ES A L Y+C SG+Y FEYQ FAIGS SQA+KT     +  FESF DSS EDLI
Sbjct: 133 LVGGLDESGAHLYYNCPSGNY-FEYQAFAIGSRSQAAKT---YLERRFESFGDSSREDLI 188

Query: 190 KVA 198
           K A
Sbjct: 189 KDA 191


>gb|AAM61575.1| 20S proteasome subunit PAF1 [Arabidopsis thaliana]
          Length = 278

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 37/63 (58%), Positives = 43/63 (68%)
 Frame = +1

Query: 10  LLDWMHESEACL*YSCRSGDYCFEYQVFAIGSCSQASKT*SALWDSNFESFTDSSSEDLI 189
           L+  + ES A L Y+C SG+Y FEYQ FAIGS SQA+KT     +  FESF DSS EDLI
Sbjct: 133 LVGGLDESGAHLYYNCPSGNY-FEYQAFAIGSRSQAAKT---YLERRFESFGDSSREDLI 188

Query: 190 KVA 198
           K A
Sbjct: 189 KDA 191


>ref|NP_199093.1| proteasome subunit alpha type-1-A [Arabidopsis thaliana]
           gi|17380545|sp|P34066.3|PSA1A_ARATH RecName:
           Full=Proteasome subunit alpha type-1-A; AltName:
           Full=20S proteasome alpha subunit F-1; AltName:
           Full=Proteasome 30 kDa subunit; AltName: Full=Proteasome
           component 2A; Short=AtPSM30; AltName: Full=Proteasome
           subunit alpha type-6; AltName: Full=Protein ARSENIC
           TOLERANCE 5 gi|14030713|gb|AAK53031.1|AF375447_1
           AT5g42790/MJB21_17 [Arabidopsis thaliana]
           gi|166830|gb|AAA16326.1| proteasome [Arabidopsis
           thaliana] gi|10177282|dbj|BAB10635.1| 20S proteasome
           subunit PAF1 [Arabidopsis thaliana]
           gi|16648704|gb|AAL25544.1| AT5g42790/MJB21_17
           [Arabidopsis thaliana] gi|21360479|gb|AAM47355.1|
           AT5g42790/MJB21_17 [Arabidopsis thaliana]
           gi|332007481|gb|AED94864.1| proteasome subunit alpha
           type-1-A [Arabidopsis thaliana]
          Length = 278

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 37/63 (58%), Positives = 43/63 (68%)
 Frame = +1

Query: 10  LLDWMHESEACL*YSCRSGDYCFEYQVFAIGSCSQASKT*SALWDSNFESFTDSSSEDLI 189
           L+  + ES A L Y+C SG+Y FEYQ FAIGS SQA+KT     +  FESF DSS EDLI
Sbjct: 133 LVGGLDESGAHLYYNCPSGNY-FEYQAFAIGSRSQAAKT---YLERRFESFGDSSREDLI 188

Query: 190 KVA 198
           K A
Sbjct: 189 KDA 191


>ref|NP_175158.1| proteasome subunit alpha type-1-B [Arabidopsis thaliana]
           gi|12229892|sp|O23712.2|PSA1B_ARATH RecName:
           Full=Proteasome subunit alpha type-1-B; AltName:
           Full=20S proteasome alpha subunit F-2; AltName:
           Full=Proteasome component 2B; AltName: Full=Proteasome
           subunit alpha type-6
           gi|12325400|gb|AAG52642.1|AC079677_6 20S proteasome
           subunit PAF2; 11103-9423 [Arabidopsis thaliana]
           gi|3421094|gb|AAC32063.1| 20S proteasome subunit PAF2
           [Arabidopsis thaliana] gi|16323091|gb|AAL15280.1|
           At1g47250/F8G22_3 [Arabidopsis thaliana]
           gi|22655336|gb|AAM98260.1| At1g47250/F8G22_3
           [Arabidopsis thaliana] gi|332194022|gb|AEE32143.1|
           proteasome subunit alpha type-1-B [Arabidopsis thaliana]
          Length = 277

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 36/63 (57%), Positives = 43/63 (68%)
 Frame = +1

Query: 10  LLDWMHESEACL*YSCRSGDYCFEYQVFAIGSCSQASKT*SALWDSNFESFTDSSSEDLI 189
           L+  + ES A L Y+C SG+Y FEYQ FAIGS SQA+KT     +  FESF +SS EDLI
Sbjct: 133 LVGGLDESGAHLYYNCPSGNY-FEYQAFAIGSRSQAAKT---YLERKFESFQESSKEDLI 188

Query: 190 KVA 198
           K A
Sbjct: 189 KDA 191