BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00036359
         (635 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002328495.1| predicted protein [Populus trichocarpa] gi|2...   243   2e-62
ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containi...   243   2e-62
ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containi...   226   2e-57
ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containi...   226   2e-57
ref|NP_187126.1| pentatricopeptide repeat-containing protein [Ar...   184   2e-44

>ref|XP_002328495.1| predicted protein [Populus trichocarpa] gi|222838210|gb|EEE76575.1|
           predicted protein [Populus trichocarpa]
          Length = 580

 Score =  243 bits (621), Expect = 2e-62
 Identities = 114/180 (63%), Positives = 143/180 (79%)
 Frame = +3

Query: 3   LTFIAILTACSHGGMIDQGLKIFNSMIDYGIEPGVEHYGCLVDLLARAGRVSEAKSIIEK 182
           +TF+++L+ACSH G++DQG+K+F+SM DYGIEPGVEHYGCLVDLLAR+GR+SEAK II++
Sbjct: 399 VTFVSVLSACSHSGLVDQGIKVFSSMTDYGIEPGVEHYGCLVDLLARSGRLSEAKDIIDQ 458

Query: 183 MPMNPSGSIWGTLLNVGKANGNVELAETAXXXXXXXXXXXXGGYVLLSNVYAACGRWSYS 362
           MPM PS SIWG +LN  +A G+VELAE A            GGY LLSN+YAA GRWSYS
Sbjct: 459 MPMKPSRSIWGAMLNACQAQGDVELAEIASRELLNLDPEEEGGYTLLSNIYAASGRWSYS 518

Query: 363 HKIRELMESRGLKKIAGCSSLVVDGDIHEFMAADKRHPRWLEVYFILSVLNKEMKLGANV 542
            KIRE MESRG+KK AGCSS+VVDG +H F++ADK HP W+++  IL+ L  EMK GA++
Sbjct: 519 KKIRETMESRGVKKTAGCSSVVVDGVVHNFISADKCHPGWVDISSILNCLKNEMKPGADL 578


>ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
            mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  243 bits (620), Expect = 2e-62
 Identities = 116/187 (62%), Positives = 143/187 (76%), Gaps = 1/187 (0%)
 Frame = +3

Query: 3    LTFIAILTACSHGGMIDQGLKIFNSMID-YGIEPGVEHYGCLVDLLARAGRVSEAKSIIE 179
            +TF+A+LTACSH G + QGL+IFNSM + YGIEPGVEHYGCLVDLL R+GR SE K +IE
Sbjct: 463  VTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVIE 522

Query: 180  KMPMNPSGSIWGTLLNVGKANGNVELAETAXXXXXXXXXXXXGGYVLLSNVYAACGRWSY 359
             MPM PS SIWG +L+  +A GN+E+AE A            GGYVLLSN+YA  GRW +
Sbjct: 523  MMPMKPSRSIWGAVLSACRAYGNIEIAEIAGKELLKLEPEKEGGYVLLSNIYATSGRWKH 582

Query: 360  SHKIRELMESRGLKKIAGCSSLVVDGDIHEFMAADKRHPRWLEVYFILSVLNKEMKLGAN 539
            S KIRE+MESRG+KK AGCSS+VVDG IHEF+AADKRHPRW+E+  IL  L  EMKLG +
Sbjct: 583  SDKIREIMESRGVKKTAGCSSVVVDGIIHEFVAADKRHPRWIEIQSILFCLKSEMKLGTD 642

Query: 540  VVSDFVE 560
             + ++++
Sbjct: 643  FLLEYLQ 649


>ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  226 bits (577), Expect = 2e-57
 Identities = 108/183 (59%), Positives = 139/183 (75%), Gaps = 1/183 (0%)
 Frame = +3

Query: 3   LTFIAILTACSHGGMIDQGLKIFNSMID-YGIEPGVEHYGCLVDLLARAGRVSEAKSIIE 179
           +TF+++L ACSH G++D+GLKIF+SM   Y IEPGVEHYGCLVDLL R+GR+ +A  +IE
Sbjct: 397 VTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIE 456

Query: 180 KMPMNPSGSIWGTLLNVGKANGNVELAETAXXXXXXXXXXXXGGYVLLSNVYAACGRWSY 359
           KMPM PS SIWG +L+  + + N+ELAE A            GGY+LLSNVYA CGRWSY
Sbjct: 457 KMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSY 516

Query: 360 SHKIRELMESRGLKKIAGCSSLVVDGDIHEFMAADKRHPRWLEVYFILSVLNKEMKLGAN 539
           S  IRE+M SRG+KKIAGCSS+ VDG +H+F A++K+HPRW+++  ILS L  EM+L A+
Sbjct: 517 SDSIREVMNSRGVKKIAGCSSVAVDGMVHDFTASNKQHPRWMDICSILSFLTNEMRLEAD 576

Query: 540 VVS 548
           V S
Sbjct: 577 VPS 579


>ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
            mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  226 bits (577), Expect = 2e-57
 Identities = 108/183 (59%), Positives = 139/183 (75%), Gaps = 1/183 (0%)
 Frame = +3

Query: 3    LTFIAILTACSHGGMIDQGLKIFNSMID-YGIEPGVEHYGCLVDLLARAGRVSEAKSIIE 179
            +TF+++L ACSH G++D+GLKIF+SM   Y IEPGVEHYGCLVDLL R+GR+ +A  +IE
Sbjct: 462  VTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIE 521

Query: 180  KMPMNPSGSIWGTLLNVGKANGNVELAETAXXXXXXXXXXXXGGYVLLSNVYAACGRWSY 359
            KMPM PS SIWG +L+  + + N+ELAE A            GGY+LLSNVYA CGRWSY
Sbjct: 522  KMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSY 581

Query: 360  SHKIRELMESRGLKKIAGCSSLVVDGDIHEFMAADKRHPRWLEVYFILSVLNKEMKLGAN 539
            S  IRE+M SRG+KKIAGCSS+ VDG +H+F A++K+HPRW+++  ILS L  EM+L A+
Sbjct: 582  SDSIREVMNSRGVKKIAGCSSVAVDGMVHDFTASNKQHPRWMDICSILSFLTNEMRLEAD 641

Query: 540  VVS 548
            V S
Sbjct: 642  VPS 644


>ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At3g04750, mitochondrial; Flags: Precursor
            gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein
            [Arabidopsis thaliana] gi|332640610|gb|AEE74131.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 661

 Score =  184 bits (466), Expect = 2e-44
 Identities = 94/178 (52%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
 Frame = +3

Query: 3    LTFIAILTACSHGGMIDQGLKIFNSMID-YGIEPGVEHYGCLVDLLARAGRVSEAKSIIE 179
            +T +A+LTACSH G++++GL +FN M D +G +P  EHYG LVDLL RAGRV EAK I++
Sbjct: 470  VTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQ 529

Query: 180  K-MPMNPSGSIWGTLLNVGKANGNVELAETAXXXXXXXXXXXXGGYVLLSNVYAACGRWS 356
            K MPM PS S+WG++L+  +   ++E AE A            GGYVLLSN+YA  GRW 
Sbjct: 530  KKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKLEPEKEGGYVLLSNIYATVGRWG 589

Query: 357  YSHKIRELMESRGLKKIAGCSSLVVDGDIHEFMAADKR-HPRWLEVYFILSVLNKEMK 527
            YS K RE ME+RG+KK AG SS+V    +H F+AA+K+ HPRW E+  IL  L  EMK
Sbjct: 590  YSDKTREAMENRGVKKTAGYSSVVGVEGLHRFVAAEKQNHPRWTEIKRILQHLYNEMK 647