BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00036347
         (353 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EEE68778.1| hypothetical protein OsJ_27492 [Oryza sativa Japo...    81   8e-14
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas...    70   2e-10
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    70   2e-10
gb|EEC73664.1| hypothetical protein OsI_08202 [Oryza sativa Indi...    69   3e-10
emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga...    68   7e-10

>gb|EEE68778.1| hypothetical protein OsJ_27492 [Oryza sativa Japonica Group]
          Length = 1170

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 42/113 (37%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
 Frame = -3

Query: 336 GYTKPMVMIKNTPGSSHLLFANDIFLFTRGDRRGIEYIAWLLQKYENTSGQCVSKEK-SK 160
           G  +P+ + +  PG SHLLFA+D  LF + D      I  +LQ YE+++GQ ++  K S 
Sbjct: 527 GLIQPLKVCRRAPGISHLLFADDSLLFFKADTEQASRIRDVLQMYESSTGQLINPSKCSM 586

Query: 159 LFTGGIHHTRIEDIEQVLGITSGAFPEKYLGVPIIQGRVTHVALRCVLDKIKK 1
           LF+        EDI+++LG+T+ +F EKYLG+P  +GR+     + + D++ K
Sbjct: 587 LFSDFCPQQHQEDIKRILGVTNSSFEEKYLGLPTPEGRMKAGQFQPIKDRLSK 639


>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 869

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 35/111 (31%), Positives = 61/111 (54%)
 Frame = -3

Query: 336 GYTKPMVMIKNTPGSSHLLFANDIFLFTRGDRRGIEYIAWLLQKYENTSGQCVSKEKSKL 157
           G  +P+ M  ++P  SHLLFA+D+ LFT+     + +I  L  ++    G  ++  KS+ 
Sbjct: 224 GEWEPIRMSASSPPLSHLLFADDVLLFTKAKNSQLRFIKDLFDRFSKALGLKINLSKSRA 283

Query: 156 FTGGIHHTRIEDIEQVLGITSGAFPEKYLGVPIIQGRVTHVALRCVLDKIK 4
           F  G+ H +I ++  + GI S     KYLG PI++GR        +++K++
Sbjct: 284 FYSGVPHQKIINLTSISGIRSTTSLGKYLGFPILKGRPKRSDFLFIIEKMR 334


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 31/97 (31%), Positives = 53/97 (54%)
 Frame = -3

Query: 336 GYTKPMVMIKNTPGSSHLLFANDIFLFTRGDRRGIEYIAWLLQKYENTSGQCVSKEKSKL 157
           G   PM   +     +H+L+A+D+ +F  G +R I  +  +  +Y   SGQ ++  KS+ 
Sbjct: 674 GQLIPMSYCRGVSFPTHILYADDVLIFCTGTKRNIRRLIKIFSQYSEVSGQLINNAKSRF 733

Query: 156 FTGGIHHTRIEDIEQVLGITSGAFPEKYLGVPIIQGR 46
           FT  +  +R++ I  +LG   G+ P  YLG PI +G+
Sbjct: 734 FTSAMTGSRVQMISSLLGFNVGSLPFTYLGCPIFRGK 770


>gb|EEC73664.1| hypothetical protein OsI_08202 [Oryza sativa Indica Group]
          Length = 725

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
 Frame = -3

Query: 336 GYTKPMVMIKNTPGSSHLLFANDIFLFTRGDRRGIEYIAWLLQKYENTSGQCVSKEKSKL 157
           G   P+ + +  PG SHLLFA+D  LF + +R     I  +L  Y   +GQ ++  K  +
Sbjct: 311 GELSPVHVCRRAPGISHLLFADDTLLFFKANRLQARVIHGILGDYAAATGQLINPAKCSI 370

Query: 156 FTGGIHHTRI-EDIEQVLGITSGAFPEKYLGVPIIQGRVTHVALRCVLDKIKK 1
             G +  T I +DI  +L I S AF ++YLG P  +GR+     + + DK+ K
Sbjct: 371 MFGDVSPTEIKDDIRNILQIGSNAFEDRYLGFPTPEGRMNKGKFQPLHDKLWK 423


>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1357

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 41/104 (39%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
 Frame = -3

Query: 309 KNTPGSSHLLFANDIFLFTRGDRRGIEYIAWLLQKYENTSGQCVSKEKSKL-FTGGIHHT 133
           +N P  SHLLFA+D  LFTR  R+    I  +L KYE  SGQ ++ EKS++ F+ G+   
Sbjct: 678 RNGPEISHLLFADDSLLFTRATRQECLTIVDILNKYEAASGQKINYEKSEVSFSRGVSCE 737

Query: 132 RIEDIEQVLGITSGAFPEKYLGVPIIQGRVTHVALRCVLDKIKK 1
           + E++  +L +      +KYLG+P + GR   V  R +LD++ K
Sbjct: 738 KKEELITLLHMRQVDRHQKYLGIPALCGRSKKVLFRELLDRMWK 781