BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00036331
         (257 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]               59   4e-07
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...    59   4e-07
emb|CAN69100.1| hypothetical protein VITISV_018848 [Vitis vinifera]    56   3e-06
ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E sub...    55   5e-06
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian...    55   5e-06

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 33/75 (44%), Positives = 42/75 (56%)
 Frame = +1

Query: 1    GTVSNVCINFIIQFKYEVESRSNGHRFFLPGEPGGALAAIAVSNPXXXXXXXXXXXXXXX 180
            GTV NVC N IIQF+Y V++R+    FF  GEP G LAA A+SNP               
Sbjct: 859  GTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAMSNP-AYKAVLDSSPSSNS 917

Query: 181  XWELMKVLSLIKIAY 225
             WELMK + L ++ +
Sbjct: 918  SWELMKEILLCQVNF 932


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 33/75 (44%), Positives = 42/75 (56%)
 Frame = +1

Query: 1    GTVSNVCINFIIQFKYEVESRSNGHRFFLPGEPGGALAAIAVSNPXXXXXXXXXXXXXXX 180
            GTV NVC N IIQF+Y V++R+    FF  GEP G LAA A+SNP               
Sbjct: 799  GTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAMSNP-AYKAVLDSSPSSNS 857

Query: 181  XWELMKVLSLIKIAY 225
             WELMK + L ++ +
Sbjct: 858  SWELMKEILLCQVNF 872


>emb|CAN69100.1| hypothetical protein VITISV_018848 [Vitis vinifera]
          Length = 438

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 34/83 (40%), Positives = 42/83 (50%)
 Frame = +1

Query: 1   GTVSNVCINFIIQFKYEVESRSNGHRFFLPGEPGGALAAIAVSNPXXXXXXXXXXXXXXX 180
           GTV NVC N IIQF+Y V++R N  RFF  GE  G LAA A+SNP               
Sbjct: 353 GTVRNVCSNSIIQFEYGVKTRINPQRFFPAGELVGVLAATAMSNP-AYKAVLDSSPSNNS 411

Query: 181 XWELMKVLSLIKIAYAFVFLFAV 249
            WEL++    +K     + L  V
Sbjct: 412 SWELIRKSCSVKSTLRMILLIGV 434


>ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine max]
          Length = 2098

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 30/75 (40%), Positives = 39/75 (52%)
 Frame = +1

Query: 1    GTVSNVCINFIIQFKYEVESRSNGHRFFLPGEPGGALAAIAVSNPXXXXXXXXXXXXXXX 180
            GTV N+C N IIQF+Y +++       F  GEP G LAA A+SNP               
Sbjct: 803  GTVRNICSNSIIQFEYGIQAGDKSEHLFPAGEPVGVLAATAMSNP-AYKAVLDASPSSNS 861

Query: 181  XWELMKVLSLIKIAY 225
             WELMK + L K+ +
Sbjct: 862  SWELMKEILLCKVNF 876


>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
            gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
            Full=DNA-directed RNA polymerase E subunit 1;
            Short=Nuclear RNA polymerase E 1; AltName:
            Full=DNA-directed RNA polymerase D subunit 1b;
            Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
            AltName: Full=Protein DEFECTIVE IN MERISTEM SILENCING 5;
            AltName: Full=Protein DEFECTIVE IN RNA-DIRECTED DNA
            METHYLATION 3; AltName: Full=Protein RNA-DIRECTED DNA
            METHYLATION DEFECTIVE 1; AltName: Full=RNA polymerase IV
            subunit 1; Short=POL IV 1 gi|59939210|gb|AAX12373.1|
            DNA-directed RNA polymerase alpha subunit [Arabidopsis
            thaliana] gi|62822917|gb|AAY15198.1| DNA-dependent RNA
            polymerase large subunit [Arabidopsis thaliana]
            gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
            [Arabidopsis thaliana]
          Length = 1976

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 32/75 (42%), Positives = 38/75 (50%)
 Frame = +1

Query: 1    GTVSNVCINFIIQFKYEVESRSNGHRFFLPGEPGGALAAIAVSNPXXXXXXXXXXXXXXX 180
            GTV N C N +IQFKY V+S       F  GEP G LAA A+SNP               
Sbjct: 795  GTVRNTCSNSVIQFKYGVDSERGHQGLFEAGEPVGVLAATAMSNP-AYKAVLDSSPNSNS 853

Query: 181  XWELMKVLSLIKIAY 225
             WELMK + L K+ +
Sbjct: 854  SWELMKEVLLCKVNF 868