BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00036244
         (407 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]   170   1e-40
ref|XP_002284321.1| PREDICTED: pentatricopeptide repeat-containi...   167   6e-40
ref|XP_003630975.1| Pentatricopeptide repeat-containing protein ...   125   3e-27
ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat...   119   2e-25
ref|XP_002528839.1| pentatricopeptide repeat-containing protein,...   119   2e-25

>emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
          Length = 1009

 Score =  170 bits (430), Expect = 1e-40
 Identities = 85/135 (62%), Positives = 99/135 (73%)
 Frame = +3

Query: 3   EIHGYILRNGLEPNIFVSSGLVDMYAKCDDMYSASKVFYKIVDKNTVSWNIFMAGLINNT 182
           EIHGY LRNG EPNIFVSS LVDMYAKC DM SA+KVF++I  +NTVSWN  MAG INN 
Sbjct: 558 EIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNALMAGYINNK 617

Query: 183 EAEEALNFFPKMLRDGLDPSSITFMVLLSACSYIASLGVGRKLHGFILKRGFGEFRAALS 362
           + EEAL  F +ML +GL PSSITFM+L  AC  IA++  GR LHG+  K    E + A+ 
Sbjct: 618 QPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIX 677

Query: 363 SALIGMYVKCGSITE 407
           SALI MY KCGSI +
Sbjct: 678 SALIDMYAKCGSILD 692



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 33/88 (37%), Positives = 49/88 (55%)
 Frame = +3

Query: 6   IHGYILRNGLEPNIFVSSGLVDMYAKCDDMYSASKVFYKIVDKNTVSWNIFMAGLINNTE 185
           IH    ++G+  N++V   ++DMY+KC     A KVF K  +KNT  WN  +A  +N  +
Sbjct: 376 IHXIAXKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFXKAENKNTAMWNEMIAAYVNEGK 435

Query: 186 AEEALNFFPKMLRDGLDPSSITFMVLLS 269
            E+AL     M +DG  P  IT+  +LS
Sbjct: 436 VEDALGLLRSMQKDGWKPDVITYNTILS 463



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 27/88 (30%), Positives = 52/88 (59%)
 Frame = +3

Query: 6   IHGYILRNGLEPNIFVSSGLVDMYAKCDDMYSASKVFYKIVDKNTVSWNIFMAGLINNTE 185
           +HG+++R  +E ++FV + L+  Y+ C D+ S+  VF+ + +++ VSW   ++  +    
Sbjct: 205 VHGFVIRKSVESDVFVGNALIHFYSNCGDLGSSRSVFHSMQERDVVSWTALISAYMEEGL 264

Query: 186 AEEALNFFPKMLRDGLDPSSITFMVLLS 269
            +EA + F  M  DG+ P  I++  LLS
Sbjct: 265 XDEAKHIFHLMQLDGVKPDLISWSALLS 292



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 38/128 (29%), Positives = 70/128 (54%), Gaps = 4/128 (3%)
 Frame = +3

Query: 27  NGLEPNIFVSSGLVDMYAKCDDMYSASKVFYKIVDKN---TV-SWNIFMAGLINNTEAEE 194
           +G++P++   S L+  +A+  ++  A +   ++ ++    TV SWN  ++G + N   E+
Sbjct: 278 DGVKPDLISWSALLSGFARNGEIDLALETLEEMPERGLQPTVNSWNGIISGCVQNGYLED 337

Query: 195 ALNFFPKMLRDGLDPSSITFMVLLSACSYIASLGVGRKLHGFILKRGFGEFRAALSSALI 374
           AL+ F +ML    DP+ IT   +L AC+ + +L +G+ +H    K G       +  ++I
Sbjct: 338 ALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHXIAXKHGI-VGNVYVEGSVI 396

Query: 375 GMYVKCGS 398
            MY KCGS
Sbjct: 397 DMYSKCGS 404



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
 Frame = +3

Query: 6   IHGYILRNGL-EPNIFVSSGLVDMYAKCDDMYSASKVFYKIVDKNTVSWNIFMAGLINNT 182
           +HGY  +  L E    + S L+DMYAKC  +  A  VF   V+K+   WN  ++    + 
Sbjct: 660 LHGYAAKCQLDELKNAIXSALIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSVHG 719

Query: 183 EAEEALNFFPKMLRDGLDPSSITFMVLLSACS 278
            A  A   F +M   G+ P  ITF+ LLSAC+
Sbjct: 720 MARNAFAVFXQMELLGIXPDHITFVSLLSACA 751


>ref|XP_002284321.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Vitis vinifera]
          Length = 700

 Score =  167 bits (424), Expect = 6e-40
 Identities = 84/135 (62%), Positives = 99/135 (73%)
 Frame = +3

Query: 3   EIHGYILRNGLEPNIFVSSGLVDMYAKCDDMYSASKVFYKIVDKNTVSWNIFMAGLINNT 182
           EIHGY LRNG EPNIFVSS LVDMYAKC DM SA+KVF++I  +NTVSWN  MAG I N 
Sbjct: 249 EIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNALMAGYIYNK 308

Query: 183 EAEEALNFFPKMLRDGLDPSSITFMVLLSACSYIASLGVGRKLHGFILKRGFGEFRAALS 362
           + EEAL  F +ML +GL PSSITFM+L  AC  IA++  GR LHG+  K    E + A++
Sbjct: 309 QPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIA 368

Query: 363 SALIGMYVKCGSITE 407
           SALI MY KCGSI +
Sbjct: 369 SALIDMYAKCGSILD 383



 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 34/88 (38%), Positives = 50/88 (56%)
 Frame = +3

Query: 6   IHGYILRNGLEPNIFVSSGLVDMYAKCDDMYSASKVFYKIVDKNTVSWNIFMAGLINNTE 185
           IH   L++G+  N++V   ++DMY+KC     A KVF K  +KNT  WN  +A  +N  +
Sbjct: 67  IHAIALKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAAYVNEGK 126

Query: 186 AEEALNFFPKMLRDGLDPSSITFMVLLS 269
            E+AL     M +DG  P  IT+  +LS
Sbjct: 127 VEDALGLLRSMQKDGWKPDVITYNTILS 154



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 31/85 (36%), Positives = 48/85 (56%)
 Frame = +3

Query: 144 SWNIFMAGLINNTEAEEALNFFPKMLRDGLDPSSITFMVLLSACSYIASLGVGRKLHGFI 323
           SWN  ++G + N   E+AL+ F +ML    DP+ IT   +L AC+ + +L +G+ +H   
Sbjct: 12  SWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHAIA 71

Query: 324 LKRGFGEFRAALSSALIGMYVKCGS 398
           LK G       +  ++I MY KCGS
Sbjct: 72  LKHGI-VGNVYVEGSVIDMYSKCGS 95



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
 Frame = +3

Query: 6   IHGYILRNGL-EPNIFVSSGLVDMYAKCDDMYSASKVFYKIVDKNTVSWNIFMAGLINNT 182
           +HGY  +  L E    ++S L+DMYAKC  +  A  VF   V+K+   WN  ++    + 
Sbjct: 351 LHGYAAKCQLDELKNAIASALIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSVHG 410

Query: 183 EAEEALNFFPKMLRDGLDPSSITFMVLLSACS 278
            A  A   F +M   G+ P  ITF+ LLSAC+
Sbjct: 411 MARNAFAVFVQMELLGILPDHITFVSLLSACA 442


>ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355524997|gb|AET05451.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  125 bits (315), Expect = 3e-27
 Identities = 53/133 (39%), Positives = 92/133 (69%)
 Frame = +3

Query: 3   EIHGYILRNGLEPNIFVSSGLVDMYAKCDDMYSASKVFYKIVDKNTVSWNIFMAGLINNT 182
           EIHGY +RNG + ++F+ S L+DMYAKC+ +  + + FY +  K+ +SWN  +AG + N 
Sbjct: 248 EIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNG 307

Query: 183 EAEEALNFFPKMLRDGLDPSSITFMVLLSACSYIASLGVGRKLHGFILKRGFGEFRAALS 362
           E +  L FF +ML++ + P +++F  ++ AC+++ +L +GR+LHG I++ GF +    ++
Sbjct: 308 EFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDD-NEFIA 366

Query: 363 SALIGMYVKCGSI 401
           S+L+ MY KCG+I
Sbjct: 367 SSLVDMYAKCGNI 379



 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 41/113 (36%), Positives = 67/113 (59%)
 Frame = +3

Query: 3   EIHGYILRNGLEPNIFVSSGLVDMYAKCDDMYSASKVFYKIVDKNTVSWNIFMAGLINNT 182
           ++HG I+R G + N F++S LVDMYAKC ++  A  VF +I  ++ V+W   + G   + 
Sbjct: 349 QLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHG 408

Query: 183 EAEEALNFFPKMLRDGLDPSSITFMVLLSACSYIASLGVGRKLHGFILKRGFG 341
            A +A++ F  ML DG+ P  + FM +L+ACS+   +  G +     ++R FG
Sbjct: 409 HALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFN-SMERDFG 460



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 19/151 (12%)
 Frame = +3

Query: 6   IHGYILRNGLEPNIFVSSGLVDMYAKCDDMYSASKVF--------------YKIVD---- 131
           +H   +R GL+ ++++++ L++ YAK    ++A KVF               K+ D    
Sbjct: 132 LHACTVRLGLDSDLYIANALINTYAK---FHNAGKVFDVFPKRGESGIDCVKKVFDMMPV 188

Query: 132 KNTVSWNIFMAGLINNTEAEEALNFFPKMLRDG-LDPSSITFMVLLSACSYIASLGVGRK 308
           ++ VSWN  +AG   N    EAL+   +M ++G L P S T   +L   +    +  G++
Sbjct: 189 RDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKE 248

Query: 309 LHGFILKRGFGEFRAALSSALIGMYVKCGSI 401
           +HG+ ++ GF +    + S+LI MY KC  +
Sbjct: 249 IHGYAVRNGF-DGDVFIGSSLIDMYAKCNRL 278


>ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  119 bits (299), Expect = 2e-25
 Identities = 52/133 (39%), Positives = 89/133 (66%)
 Frame = +3

Query: 3   EIHGYILRNGLEPNIFVSSGLVDMYAKCDDMYSASKVFYKIVDKNTVSWNIFMAGLINNT 182
           EIHGY +RNG + ++F+ S L+DMYAKC  +  + +VFY +   + +SWN  +AG + N 
Sbjct: 257 EIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNG 316

Query: 183 EAEEALNFFPKMLRDGLDPSSITFMVLLSACSYIASLGVGRKLHGFILKRGFGEFRAALS 362
             +E L FF +ML   + P+ ++F  ++ AC+++ +L +G++LHG+I++  F +    ++
Sbjct: 317 MFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRF-DGNVFIA 375

Query: 363 SALIGMYVKCGSI 401
           SAL+ MY KCG+I
Sbjct: 376 SALVDMYAKCGNI 388



 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 35/93 (37%), Positives = 62/93 (66%)
 Frame = +3

Query: 3   EIHGYILRNGLEPNIFVSSGLVDMYAKCDDMYSASKVFYKIVDKNTVSWNIFMAGLINNT 182
           ++HGYI+R+  + N+F++S LVDMYAKC ++ +A  +F K+   + VSW   + G   + 
Sbjct: 358 QLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHG 417

Query: 183 EAEEALNFFPKMLRDGLDPSSITFMVLLSACSY 281
            A +A++ F +M  +G+ P+ + FM +L+ACS+
Sbjct: 418 HAYDAISLFKRMEVEGVKPNYVAFMAVLTACSH 450



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 29/163 (17%)
 Frame = +3

Query: 6   IHGYILRNGLEPNIFVSSGLVDMYAK------------------CDDMYSAS-------- 107
           +HG I+R G+  +++  + L++MY+K                    D+YS          
Sbjct: 128 VHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLG 187

Query: 108 ---KVFYKIVDKNTVSWNIFMAGLINNTEAEEALNFFPKMLRDGLDPSSITFMVLLSACS 278
              KVF  +  ++ VSWN  ++G   N   E+AL    +M    L P S T   +L   +
Sbjct: 188 SLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFA 247

Query: 279 YIASLGVGRKLHGFILKRGFGEFRAALSSALIGMYVKCGSITE 407
              +L  G+++HG+ ++ G+ +    + S+LI MY KC  + +
Sbjct: 248 EYVNLLKGKEIHGYAIRNGY-DADVFIGSSLIDMYAKCTRVDD 289


>ref|XP_002528839.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531751|gb|EEF33573.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 393

 Score =  119 bits (299), Expect = 2e-25
 Identities = 52/133 (39%), Positives = 91/133 (68%)
 Frame = +3

Query: 3   EIHGYILRNGLEPNIFVSSGLVDMYAKCDDMYSASKVFYKIVDKNTVSWNIFMAGLINNT 182
           EIHGY +R+GL+ ++F+ S L+DMYAKC  +  + +VF  +  ++ +SWN  +AG + N+
Sbjct: 208 EIHGYAIRHGLDGDVFIGSSLIDMYAKCTRVEDSLRVFSLLPRRDDISWNSIIAGCVQNS 267

Query: 183 EAEEALNFFPKMLRDGLDPSSITFMVLLSACSYIASLGVGRKLHGFILKRGFGEFRAALS 362
             +E L FF +ML+  + P  ++F  +L AC+++ +L +GR+LHG+IL+  F +    ++
Sbjct: 268 LFDEGLRFFRQMLKANVKPRQVSFSSILPACAHLTTLNLGRQLHGYILRVRF-DNNVFIA 326

Query: 363 SALIGMYVKCGSI 401
           S+L+ MY KCG++
Sbjct: 327 SSLVDMYAKCGNV 339



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 30/82 (36%), Positives = 49/82 (59%)
 Frame = +3

Query: 3   EIHGYILRNGLEPNIFVSSGLVDMYAKCDDMYSASKVFYKIVDKNTVSWNIFMAGLINNT 182
           ++HGYILR   + N+F++S LVDMYAKC ++  A  +F K+   + VSW   + G   + 
Sbjct: 309 QLHGYILRVRFDNNVFIASSLVDMYAKCGNVKVARWIFDKMKQHDMVSWTAMIMGYALHG 368

Query: 183 EAEEALNFFPKMLRDGLDPSSI 248
            A +A++ F +M   G+   +I
Sbjct: 369 HARDAISLFEQMEMRGMKLGNI 390



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 7/132 (5%)
 Frame = +3

Query: 33  LEPNIFVSSGLVDMYAKCD-------DMYSASKVFYKIVDKNTVSWNIFMAGLINNTEAE 191
           + P I V+  + D   K         D+ S  KVF  +  ++ VSWN  +AG  +N   E
Sbjct: 110 VSPQISVNGYITDQSYKASHNICRTSDVDSVRKVFEMMPKRDLVSWNTVIAGNAHNGMHE 169

Query: 192 EALNFFPKMLRDGLDPSSITFMVLLSACSYIASLGVGRKLHGFILKRGFGEFRAALSSAL 371
           EAL    +M    L P S T   +L   +   ++  G+++HG+ ++ G  +    + S+L
Sbjct: 170 EALVMVREMGNVNLKPDSFTLSSVLPIFAEYVNVDKGKEIHGYAIRHGL-DGDVFIGSSL 228

Query: 372 IGMYVKCGSITE 407
           I MY KC  + +
Sbjct: 229 IDMYAKCTRVED 240