BLASTX nr result
ID: Coptis25_contig00036156
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00036156
(959 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containi... 494 e-138
emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera] 491 e-136
ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containi... 441 e-122
ref|XP_004170773.1| PREDICTED: pentatricopeptide repeat-containi... 422 e-116
ref|XP_004152427.1| PREDICTED: pentatricopeptide repeat-containi... 420 e-115
>ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like
[Vitis vinifera]
Length = 533
Score = 494 bits (1273), Expect = e-138
Identities = 230/319 (72%), Positives = 280/319 (87%)
Frame = -1
Query: 959 FVVTALIEFYSSVGDMGTARSLFDRILKKDVVLWTAMIDGYGKVGDVKEARVLFDEMSER 780
FVV+ALIEFYS DMGTAR+LFDRI +DVVLWTAMIDGYGK+GDV+ AR+LF++M ER
Sbjct: 150 FVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPER 209
Query: 779 NVISWSAMMAAYSRVSEFKEVLSLFREMQEVGTIPNDSVLVSVLTACANLGALAQGFWVH 600
N ISWSA+MAAYSRV +FKEVL LFR MQE GT+PN+SVLVSVLTACA+LGALAQG WVH
Sbjct: 210 NAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAHLGALAQGLWVH 269
Query: 599 SYVKHHNLDSNTILSTAITDMYAKCGCIDAALSVFEHIKNKDVGAWNAIISGVAMNSDIG 420
SY K N DSN IL+TA+ DMY+KCGC+++ALS F+ I NKD GAWNA+ISGVAMN D
Sbjct: 270 SYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGVAMNGDAW 329
Query: 419 KSLELFNRMPMHGAQPNDTTFIAILTACTHAGLVDEGVNLFDKMGTIYKLEPRLEHYACV 240
KSLELFN+M +G QP +TTF+A+LTACTHA LV EG+ LF++M + Y +EP+LEHYAC+
Sbjct: 330 KSLELFNKMISNGTQPTETTFVAVLTACTHARLVKEGLKLFEQMSSNYGVEPQLEHYACL 389
Query: 239 VDLLARAGRLEEAEKFIEERIGGVGKGDANVWGALLGACRTYGNVKVGNRVWRKLADLGV 60
VDL+ARAG L EAEKFIEE++GG+G+GDANVWGA+LGACRTYGN++VGNRVW+KLAD+GV
Sbjct: 390 VDLMARAGMLAEAEKFIEEKMGGLGRGDANVWGAMLGACRTYGNIEVGNRVWKKLADMGV 449
Query: 59 ADCGTYIILYNMYKESGWE 3
ADCGT+++ YN+Y+E+GW+
Sbjct: 450 ADCGTHVLSYNLYREAGWD 468
Score = 84.3 bits (207), Expect = 4e-14
Identities = 65/294 (22%), Positives = 123/294 (41%), Gaps = 35/294 (11%)
Frame = -1
Query: 812 ARVLFDEMSERNVISWSAMMAAYSRVSEFKEVLSLFREMQEVGTIPNDSVLVSVLTACAN 633
A ++F +S RN+ +++M+ Y + + +M G + N+ ++ AC
Sbjct: 65 ACLIFQNLSLRNIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTT 124
Query: 632 LGALAQ--GFWVHSYVKHHNLDSNTILSTAITDMYAKCGCIDAALSVFEHIKNKDVGAWN 459
LG+ ++ G VH++V D + + +A+ + Y+ + A ++F+ I N+DV W
Sbjct: 125 LGSSSKLIGCLVHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWT 184
Query: 458 AIISGVAMNSDIGKS-------------------------------LELFNRMPMHGAQP 372
A+I G D+ + L LF RM G P
Sbjct: 185 AMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMP 244
Query: 371 NDTTFIAILTACTHAGLVDEG--VNLFDKMGTIYKLEPRLEHYACVVDLLARAGRLEEAE 198
N++ +++LTAC H G + +G V+ + K + P L +VD+ ++ G +E A
Sbjct: 245 NESVLVSVLTACAHLGALAQGLWVHSYAKQCN-FDSNPILA--TALVDMYSKCGCVESAL 301
Query: 197 KFIEERIGGVGKGDANVWGALLGACRTYGNVKVGNRVWRKLADLGVADCGTYII 36
+ G+ DA W A++ G+ ++ K+ G T +
Sbjct: 302 STFQ----GIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFV 351
>emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]
Length = 805
Score = 491 bits (1264), Expect = e-136
Identities = 229/319 (71%), Positives = 278/319 (87%)
Frame = -1
Query: 959 FVVTALIEFYSSVGDMGTARSLFDRILKKDVVLWTAMIDGYGKVGDVKEARVLFDEMSER 780
FVV+ALIEFYS DMGTAR+LFDRI +DVVLWTAMIDGYGK+GDV+ AR+LF++M ER
Sbjct: 422 FVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPER 481
Query: 779 NVISWSAMMAAYSRVSEFKEVLSLFREMQEVGTIPNDSVLVSVLTACANLGALAQGFWVH 600
N ISWSA+MAAYSRV +FKEVL LFR MQE GT+PN+SVLVSVLTACA+LGALAQG WVH
Sbjct: 482 NAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAHLGALAQGLWVH 541
Query: 599 SYVKHHNLDSNTILSTAITDMYAKCGCIDAALSVFEHIKNKDVGAWNAIISGVAMNSDIG 420
SY K N DSN IL+TA+ DMY+KCGC+++ALS F+ I NKD GAWNA+ISGVAMN D
Sbjct: 542 SYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGVAMNGDAW 601
Query: 419 KSLELFNRMPMHGAQPNDTTFIAILTACTHAGLVDEGVNLFDKMGTIYKLEPRLEHYACV 240
KSLELFN+M +G QP +TTF+A+LTACTHA LV EG+ LF++M + Y +EP+ EHYAC+
Sbjct: 602 KSLELFNKMISNGTQPTETTFVAVLTACTHARLVREGLKLFEQMSSNYGVEPQXEHYACL 661
Query: 239 VDLLARAGRLEEAEKFIEERIGGVGKGDANVWGALLGACRTYGNVKVGNRVWRKLADLGV 60
VDL+ARAG L EAEKFIEE++GG+G+GDANVWGA LGACRTYGN++VGNRVW+KLAD+GV
Sbjct: 662 VDLMARAGMLAEAEKFIEEKMGGLGRGDANVWGAXLGACRTYGNIEVGNRVWKKLADMGV 721
Query: 59 ADCGTYIILYNMYKESGWE 3
ADCGT+++ YN+Y+E+GW+
Sbjct: 722 ADCGTHVLSYNLYREAGWD 740
Score = 80.5 bits (197), Expect = 6e-13
Identities = 63/287 (21%), Positives = 119/287 (41%), Gaps = 35/287 (12%)
Frame = -1
Query: 791 MSERNVISWSAMMAAYSRVSEFKEVLSLFREMQEVGTIPNDSVLVSVLTACANLGALAQ- 615
+S RN+ +++M+ Y + + +M G + N+ ++ AC LG+ ++
Sbjct: 344 LSLRNIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSSKL 403
Query: 614 -GFWVHSYVKHHNLDSNTILSTAITDMYAKCGCIDAALSVFEHIKNKDVGAWNAIISGVA 438
G VH++V D + + +A+ + Y+ + A ++F+ I N+DV W A+I G
Sbjct: 404 IGCLVHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDGYG 463
Query: 437 MNSDIGKS-------------------------------LELFNRMPMHGAQPNDTTFIA 351
D+ + L LF RM G PN++ ++
Sbjct: 464 KMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVS 523
Query: 350 ILTACTHAGLVDEG--VNLFDKMGTIYKLEPRLEHYACVVDLLARAGRLEEAEKFIEERI 177
+LTAC H G + +G V+ + K + P L +VD+ ++ G +E A +
Sbjct: 524 VLTACAHLGALAQGLWVHSYAKQCN-FDSNPILA--TALVDMYSKCGCVESALSTFQ--- 577
Query: 176 GGVGKGDANVWGALLGACRTYGNVKVGNRVWRKLADLGVADCGTYII 36
G+ DA W A++ G+ ++ K+ G T +
Sbjct: 578 -GIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFV 623
>ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like
[Glycine max]
Length = 526
Score = 441 bits (1135), Expect = e-122
Identities = 203/319 (63%), Positives = 265/319 (83%)
Frame = -1
Query: 959 FVVTALIEFYSSVGDMGTARSLFDRILKKDVVLWTAMIDGYGKVGDVKEARVLFDEMSER 780
+VV+A IEFYS ++ TAR LFD KDVVL TAM+DGYGK+G+VK AR +FD+M ER
Sbjct: 146 YVVSAFIEFYSVSREVDTARVLFDETSYKDVVLGTAMVDGYGKMGNVKSAREVFDKMPER 205
Query: 779 NVISWSAMMAAYSRVSEFKEVLSLFREMQEVGTIPNDSVLVSVLTACANLGALAQGFWVH 600
N +SWSAMMAAYSRVS+FKEVL+LF EMQ GT PN+S+LV+VLTACA+LGAL QG WVH
Sbjct: 206 NAVSWSAMMAAYSRVSDFKEVLALFTEMQNEGTEPNESILVTVLTACAHLGALTQGLWVH 265
Query: 599 SYVKHHNLDSNTILSTAITDMYAKCGCIDAALSVFEHIKNKDVGAWNAIISGVAMNSDIG 420
SY + +L+SN IL+TA+ DMY+KCGC+++ALSVF+ I +KD GAWNA+ISG A+N D G
Sbjct: 266 SYARRFHLESNPILATALVDMYSKCGCVESALSVFDCIVDKDAGAWNAMISGEALNGDAG 325
Query: 419 KSLELFNRMPMHGAQPNDTTFIAILTACTHAGLVDEGVNLFDKMGTIYKLEPRLEHYACV 240
KSL+LF +M +PN+TTF+A+LTACTHA +V +G+ LF++M ++Y + PR+EHYACV
Sbjct: 326 KSLQLFRQMAASRTKPNETTFVAVLTACTHAKMVQQGLWLFEEMSSVYGVVPRMEHYACV 385
Query: 239 VDLLARAGRLEEAEKFIEERIGGVGKGDANVWGALLGACRTYGNVKVGNRVWRKLADLGV 60
+DLL+RAG +EEAEKF+EE++GG+ GDANVWGALL ACR + N+ VGNRVW+KL D+GV
Sbjct: 386 IDLLSRAGMVEEAEKFMEEKMGGLTAGDANVWGALLNACRIHKNIHVGNRVWKKLVDMGV 445
Query: 59 ADCGTYIILYNMYKESGWE 3
DCGT+++ YN+Y+E+GW+
Sbjct: 446 TDCGTHVLTYNIYREAGWD 464
>ref|XP_004170773.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like
[Cucumis sativus]
Length = 487
Score = 422 bits (1084), Expect = e-116
Identities = 197/319 (61%), Positives = 257/319 (80%)
Frame = -1
Query: 959 FVVTALIEFYSSVGDMGTARSLFDRILKKDVVLWTAMIDGYGKVGDVKEARVLFDEMSER 780
FVV+AL+EFYS + D+ AR LFD+ KDVV+WT M+DGYGKVGD++ ARVLFDEM ER
Sbjct: 148 FVVSALVEFYS-LFDLKVARVLFDKSSGKDVVVWTVMVDGYGKVGDIESARVLFDEMPER 206
Query: 779 NVISWSAMMAAYSRVSEFKEVLSLFREMQEVGTIPNDSVLVSVLTACANLGALAQGFWVH 600
NVISWSAMMAAYSRVS+F+EVL LFR+MQ+ +PNDSV+VSVLTACA+LGA+ QG W+H
Sbjct: 207 NVISWSAMMAAYSRVSDFREVLCLFRQMQKKNIVPNDSVIVSVLTACAHLGAITQGLWMH 266
Query: 599 SYVKHHNLDSNTILSTAITDMYAKCGCIDAALSVFEHIKNKDVGAWNAIISGVAMNSDIG 420
SY K + LDSN IL+TA+ DMY+KCG I++AL VFE I NKD GAWNA+ISG AM ++
Sbjct: 267 SYAKRYGLDSNPILATALVDMYSKCGYIESALEVFEGISNKDAGAWNAMISGFAMTGNVV 326
Query: 419 KSLELFNRMPMHGAQPNDTTFIAILTACTHAGLVDEGVNLFDKMGTIYKLEPRLEHYACV 240
KSLELF++M G Q + TF++IL ACTHA +V+ G+ FD+M +Y+++P+ EHYACV
Sbjct: 327 KSLELFDKMIASGTQATEATFVSILAACTHAKMVERGLEFFDQMYPVYRVQPQFEHYACV 386
Query: 239 VDLLARAGRLEEAEKFIEERIGGVGKGDANVWGALLGACRTYGNVKVGNRVWRKLADLGV 60
VDL+ARAG +E+AEKF+EE++GG DANVWGA+L ACR Y N+++G+R+W KL+ LG+
Sbjct: 387 VDLMARAGMVEDAEKFVEEKMGGFSNVDANVWGAILSACRQYRNIEIGDRIWTKLSALGL 446
Query: 59 ADCGTYIILYNMYKESGWE 3
D GT ++ YN++ E+G E
Sbjct: 447 LDGGTQVLSYNIFSEAGRE 465
>ref|XP_004152427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like
[Cucumis sativus]
Length = 528
Score = 420 bits (1080), Expect = e-115
Identities = 196/319 (61%), Positives = 256/319 (80%)
Frame = -1
Query: 959 FVVTALIEFYSSVGDMGTARSLFDRILKKDVVLWTAMIDGYGKVGDVKEARVLFDEMSER 780
FVV+AL+EFYS + D+ AR LFD+ KDVV+WT M+DGYGKVGD++ ARVLFDEM ER
Sbjct: 148 FVVSALVEFYS-LFDLKVARVLFDKSSGKDVVVWTVMVDGYGKVGDIESARVLFDEMPER 206
Query: 779 NVISWSAMMAAYSRVSEFKEVLSLFREMQEVGTIPNDSVLVSVLTACANLGALAQGFWVH 600
NVISWSAMMAAYSRVS+F+EVL LFR+MQ+ +PNDSV+ SVLTACA+LGA+ QG W+H
Sbjct: 207 NVISWSAMMAAYSRVSDFREVLCLFRQMQKKNIVPNDSVIASVLTACAHLGAITQGLWMH 266
Query: 599 SYVKHHNLDSNTILSTAITDMYAKCGCIDAALSVFEHIKNKDVGAWNAIISGVAMNSDIG 420
SY K + LDSN IL+TA+ DMY+KCG I++AL VFE I NKD GAWNA+ISG AM ++
Sbjct: 267 SYAKRYGLDSNPILATALVDMYSKCGYIESALEVFEGISNKDAGAWNAMISGFAMTGNVV 326
Query: 419 KSLELFNRMPMHGAQPNDTTFIAILTACTHAGLVDEGVNLFDKMGTIYKLEPRLEHYACV 240
KSLELF++M G Q + TF++IL ACTHA +V+ G+ FD+M +Y+++P+ EHYACV
Sbjct: 327 KSLELFDKMIASGTQATEATFVSILAACTHAKMVERGLEFFDQMYPVYRVQPQFEHYACV 386
Query: 239 VDLLARAGRLEEAEKFIEERIGGVGKGDANVWGALLGACRTYGNVKVGNRVWRKLADLGV 60
VDL+ARAG +E+AEKF+EE++GG DANVWGA+L ACR Y N+++G+R+W KL+ LG+
Sbjct: 387 VDLMARAGMVEDAEKFVEEKMGGFSNVDANVWGAILSACRQYRNIEIGDRIWTKLSALGL 446
Query: 59 ADCGTYIILYNMYKESGWE 3
D GT ++ YN++ E+G E
Sbjct: 447 LDGGTQVLSYNIFSEAGRE 465