BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00036122
         (356 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD40072.1| OSJNBa0085C10.25 [Oryza sativa Japonica Group]         58   1e-13
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...    57   2e-13
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]        57   2e-13
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]                  49   9e-13
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...    55   4e-12

>emb|CAD40072.1| OSJNBa0085C10.25 [Oryza sativa Japonica Group]
          Length = 625

 Score = 57.8 bits (138), Expect(3) = 1e-13
 Identities = 24/58 (41%), Positives = 37/58 (63%)
 Frame = -3

Query: 180 SSLLGRPWQYDVDSTHWGKDNTFTFSKNGVRVVLAPMGNPVVSEASKEKVQNFLISSN 7
           S LLGRPW++D D+TH G+ N +TF  NG ++ L P+  P + EA KE+  +  +  +
Sbjct: 257 SFLLGRPWEHDNDATHHGRSNKYTFVHNGKKITLLPLTLPEIVEADKERAASLKLDES 314



 Score = 42.0 bits (97), Expect(3) = 1e-13
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = -1

Query: 356 GGSSENIVSKEMDDKLQLPTEKHPSPYSIGWIKDVG 249
           GGS  N+VS ++  KL L T  HP PY I W+ D G
Sbjct: 190 GGSCNNLVSSDLVKKLGLTTRTHPHPYHIQWLNDSG 225



 Score = 20.8 bits (42), Expect(3) = 1e-13
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 217 CKISFSIGS 191
           C++SFSIGS
Sbjct: 233 CRVSFSIGS 241


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
           gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1616

 Score = 57.4 bits (137), Expect(2) = 2e-13
 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
 Frame = -3

Query: 180 SSLLGRPWQYDVDSTHWGKDNTFTFSKNGVRVVLAPMGNPVV-----SEASKEKVQNFLI 16
           S LLGRPWQ+D DS H+GK N ++F  NG ++VL PM   V+     + ASK+K Q    
Sbjct: 575 SMLLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELARASKQKNQEHTR 634

Query: 15  SSNFL 1
           S + +
Sbjct: 635 SEHLI 639



 Score = 42.7 bits (99), Expect(2) = 2e-13
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = -1

Query: 356 GGSSENIVSKEMDDKLQLPTEKHPSPYSIGWIKDVGE 246
           GGS  N+ S EM +KL L T+ HP PY I W+   G+
Sbjct: 508 GGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGK 544


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score = 57.4 bits (137), Expect(2) = 2e-13
 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
 Frame = -3

Query: 180 SSLLGRPWQYDVDSTHWGKDNTFTFSKNGVRVVLAPMGNPVV-----SEASKEKVQNFLI 16
           S LLGRPWQ+D DS H+GK N ++F  NG ++VL PM   V+     + ASK+K Q    
Sbjct: 575 SMLLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELARASKQKNQEHTR 634

Query: 15  SSNFL 1
           S + +
Sbjct: 635 SEHLI 639



 Score = 42.7 bits (99), Expect(2) = 2e-13
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = -1

Query: 356 GGSSENIVSKEMDDKLQLPTEKHPSPYSIGWIKDVGE 246
           GGS  N+ S EM +KL L T+ HP PY I W+   G+
Sbjct: 508 GGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGK 544


>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
          Length = 1518

 Score = 49.3 bits (116), Expect(3) = 9e-13
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 7/49 (14%)
 Frame = -3

Query: 174 LLGRPWQYDVDSTHWGKDNTFTFSKNGVRVVLAPM-------GNPVVSE 49
           LLGRPW+YD ++TH GKDN + F   G +V L P+       G+P V E
Sbjct: 488 LLGRPWEYDRNTTHQGKDNVYIFKHQGKKVTLTPLPPNQRDYGSPNVPE 536



 Score = 42.7 bits (99), Expect(3) = 9e-13
 Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = -1

Query: 356 GGSSENIVSKEMDDKLQLPTEKHPSPYSIGWI-KDVG 249
           GGS  N+ S  M  KL LPT++HP+PY + W+ KD G
Sbjct: 417 GGSCTNVASTTMVSKLGLPTQEHPNPYKLRWLSKDSG 453



 Score = 25.4 bits (54), Expect(3) = 9e-13
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 259 RMLVKQG*ILVDSRCKISFSIGSRW 185
           R L K   + VD +C ISFSIG  +
Sbjct: 446 RWLSKDSGVRVDKQCIISFSIGKMY 470


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
           gi|15217296|gb|AAK92640.1|AC079634_1 Putative
           retroelement [Oryza sativa Japonica Group]
           gi|31431373|gb|AAP53161.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 1708

 Score = 55.5 bits (132), Expect(2) = 4e-12
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
 Frame = -3

Query: 180 SSLLGRPWQYDVDSTHWGKDNTFTFSKNGVRVVLAPMGNPVV-----SEASKEKVQNFLI 16
           S  LGRPWQ+D DS H+GK N ++F  NG ++VL PM   V+     + ASK+K Q    
Sbjct: 575 SIFLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELARASKQKNQEHTR 634

Query: 15  SSNFL 1
           S + +
Sbjct: 635 SEHLI 639



 Score = 40.4 bits (93), Expect(2) = 4e-12
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = -1

Query: 353 GSSENIVSKEMDDKLQLPTEKHPSPYSIGWIKDVGE 246
           GS  N+ S EM +KL L T+ HP PY I W+   G+
Sbjct: 509 GSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGK 544