BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00036121
         (821 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containi...   421   e-115
gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japo...   325   1e-86
ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containi...   323   2e-86
tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea m...   322   8e-86
ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containi...   274   2e-71

>ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  421 bits (1081), Expect = e-115
 Identities = 199/273 (72%), Positives = 237/273 (86%)
 Frame = +3

Query: 3   KLGTVDVAKNILDEMDQPDMVSYNVLLAECVRIGKVDLARHLFDKMPARDLVSWNTMIHG 182
           K G +++A+NILDEM  PD+V YNVLLAE VR+G+++LA  LFD+MP RDLVSWNTMIHG
Sbjct: 152 KFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHG 211

Query: 183 FATCGDVDTATQLFDMSSERDLVSWSSMIVGYAKSRQSNEALILFHDMQSANVRPDRVTM 362
            A+ GDV TA +LFD + ERDL+SWSSMI  YAK+RQSNEAL LFH+MQ ANV PD+VTM
Sbjct: 212 HASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTM 271

Query: 363 VSVLSACGDLGALGMGKIVHEYIDRNKVEIDVKLGTSLVDMYAKCGDIENSLKVFNGMGV 542
           VSVLSACGD+GALGMGK++HE I+RN++EID+KLGTSLVDMYAKCGDI+NSL+VFNGM  
Sbjct: 272 VSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNN 331

Query: 543 KDVFTWSAVIIGLANHGFGEHALDYFAKMIYGGIKPNGITFIGVLSACSHVGLVDRGWTY 722
           +DVF WSA+I+GLANHGFGE ALD+F+KMI   IKPN +TFIGVLSACSH+GLVD GWTY
Sbjct: 332 RDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTY 391

Query: 723 FTSMNDKYGVTPKIEHYGCMVDLLGRMAHLREA 821
           FTSM+  Y V+PKIEHYGC+VD+LGR   L+EA
Sbjct: 392 FTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEA 424



 Score = 66.6 bits (161), Expect = 6e-09
 Identities = 57/239 (23%), Positives = 95/239 (39%), Gaps = 63/239 (26%)
 Frame = +3

Query: 186 ATCGDVDTATQLFDMSSERDLVSWSSMIVGYAKSRQSNEALILFHDMQSANVRP-DRVTM 362
           ++  D+  A  +FD     D   W++MI  Y  S+   E++ LF  M+     P D  ++
Sbjct: 49  SSANDLLYARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSL 108

Query: 363 VSVLSACGDLGALGMGKIVHEYIDRNKVEIDVKLGTSLVDMYAKCGDIENSLKV------ 524
             V+ ACG L   G G+ +H  + +  +  D+ + T+L++MYAK GDIE +  +      
Sbjct: 109 SLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAH 168

Query: 525 -------------------------FNGMGVKDVFTWSAVIIGLANHG------------ 593
                                    F+ M  +D+ +W+ +I G A+ G            
Sbjct: 169 PDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRT 228

Query: 594 -------------------FGEHALDYFAKMIYGGIKPNGITFIGVLSACSHVGLVDRG 713
                                  AL  F +M    + P+ +T + VLSAC  VG +  G
Sbjct: 229 CERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMG 287


>gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  325 bits (832), Expect = 1e-86
 Identities = 156/273 (57%), Positives = 205/273 (75%)
 Frame = +3

Query: 3   KLGTVDVAKNILDEMDQPDMVSYNVLLAECVRIGKVDLARHLFDKMPARDLVSWNTMIHG 182
           K G VD+A++  DE    D+   NV+LA  V   +V  AR +FD MP RDLVSWNTMIHG
Sbjct: 4   KAGRVDLARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHG 63

Query: 183 FATCGDVDTATQLFDMSSERDLVSWSSMIVGYAKSRQSNEALILFHDMQSANVRPDRVTM 362
           +A  G+V  A ++FD + +RD  SWSSMI  YAKSR+S EAL L+ +M +A++ PD +T+
Sbjct: 64  YAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITL 123

Query: 363 VSVLSACGDLGALGMGKIVHEYIDRNKVEIDVKLGTSLVDMYAKCGDIENSLKVFNGMGV 542
           VSV+SAC DLGAL +G  VH +++ N++E+D+KLGT+L+DMYAKCGDIE++ +VF+ M  
Sbjct: 124 VSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPE 183

Query: 543 KDVFTWSAVIIGLANHGFGEHALDYFAKMIYGGIKPNGITFIGVLSACSHVGLVDRGWTY 722
           KDV TWS++IIGLANHG G  +L  F+KMI  G+KPNG+TF+GVL AC+HVGLV  G  Y
Sbjct: 184 KDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKY 243

Query: 723 FTSMNDKYGVTPKIEHYGCMVDLLGRMAHLREA 821
           F SMN+ +G+ P +EHYGCMVDLLGR  H+ EA
Sbjct: 244 FRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEA 276


>ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  323 bits (829), Expect = 2e-86
 Identities = 161/271 (59%), Positives = 203/271 (74%)
 Frame = +3

Query: 9   GTVDVAKNILDEMDQPDMVSYNVLLAECVRIGKVDLARHLFDKMPARDLVSWNTMIHGFA 188
           G + +A+   DE  + D+   NV+LA  V  G+V  AR +FD M  RDLVSWNTMIHG+A
Sbjct: 99  GEIALARAAFDEAPRRDVFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYA 158

Query: 189 TCGDVDTATQLFDMSSERDLVSWSSMIVGYAKSRQSNEALILFHDMQSANVRPDRVTMVS 368
             GDV  A ++FD + +RD  SWSSMI  YAK R S EAL L+ +M+ A V PD ++MVS
Sbjct: 159 VRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVS 218

Query: 369 VLSACGDLGALGMGKIVHEYIDRNKVEIDVKLGTSLVDMYAKCGDIENSLKVFNGMGVKD 548
           VLSAC  +GAL +G  VH +++ N+VE+D+KLGT+LVDMYAKCGDIENSLKVF+ M VKD
Sbjct: 219 VLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKD 278

Query: 549 VFTWSAVIIGLANHGFGEHALDYFAKMIYGGIKPNGITFIGVLSACSHVGLVDRGWTYFT 728
           V TWS++IIGLANHG G  AL  F++MI  G++PN ITFIGVL AC+HVGLV+ G  YF+
Sbjct: 279 VLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFS 338

Query: 729 SMNDKYGVTPKIEHYGCMVDLLGRMAHLREA 821
           SM+D +GV P++EHYGCMVDLLGR  H+ EA
Sbjct: 339 SMSDVHGVVPRMEHYGCMVDLLGRAGHVEEA 369


>tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  322 bits (824), Expect = 8e-86
 Identities = 155/273 (56%), Positives = 205/273 (75%)
 Frame = +3

Query: 3   KLGTVDVAKNILDEMDQPDMVSYNVLLAECVRIGKVDLARHLFDKMPARDLVSWNTMIHG 182
           K G  D+A+   DE  + D+   NV+LA  V  G+V  AR +FD M  RD+VSWNTMIHG
Sbjct: 87  KAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHG 146

Query: 183 FATCGDVDTATQLFDMSSERDLVSWSSMIVGYAKSRQSNEALILFHDMQSANVRPDRVTM 362
           +A  G+VD A ++F+   +RD  SWSSM+  Y K R+S +AL L+ +M++A V PD  TM
Sbjct: 147 YAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTM 206

Query: 363 VSVLSACGDLGALGMGKIVHEYIDRNKVEIDVKLGTSLVDMYAKCGDIENSLKVFNGMGV 542
           VSVLSAC D+GAL +G  VH++++ N VE+DVKLGT+L+DMYAKCGDIENS++VF+ M V
Sbjct: 207 VSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPV 266

Query: 543 KDVFTWSAVIIGLANHGFGEHALDYFAKMIYGGIKPNGITFIGVLSACSHVGLVDRGWTY 722
           KDV TWS++IIGLANHGFG  AL  F++M+  G++PN +TFIGVL +C+H+GLV  G  Y
Sbjct: 267 KDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKY 326

Query: 723 FTSMNDKYGVTPKIEHYGCMVDLLGRMAHLREA 821
           F+SM+  +GVTPK++HYGCMVDLLGR  H+ EA
Sbjct: 327 FSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEA 359


>ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  274 bits (701), Expect = 2e-71
 Identities = 133/271 (49%), Positives = 189/271 (69%)
 Frame = +3

Query: 9   GTVDVAKNILDEMDQPDMVSYNVLLAECVRIGKVDLARHLFDKMPARDLVSWNTMIHGFA 188
           G ++ A+++LD M + D+VS+N LL+     G ++LA HLFD+M  R++ SWN MI G+ 
Sbjct: 157 GCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYV 216

Query: 189 TCGDVDTATQLFDMSSERDLVSWSSMIVGYAKSRQSNEALILFHDMQSANVRPDRVTMVS 368
             G ++ A ++F  +  +++VSW++MI GY+ + + +E L+LF DMQ A V+PD  T+VS
Sbjct: 217 GVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVS 276

Query: 369 VLSACGDLGALGMGKIVHEYIDRNKVEIDVKLGTSLVDMYAKCGDIENSLKVFNGMGVKD 548
           VLSAC  +GAL  G+ VH YID+N + ID  + T+LVDMY+KCG IE +L+VFN    KD
Sbjct: 277 VLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKD 336

Query: 549 VFTWSAVIIGLANHGFGEHALDYFAKMIYGGIKPNGITFIGVLSACSHVGLVDRGWTYFT 728
           + TW+++I GL+ HG G+HAL  F++M+  G KPN +TF+ VLSACS  GL+D G   F 
Sbjct: 337 ISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFN 396

Query: 729 SMNDKYGVTPKIEHYGCMVDLLGRMAHLREA 821
            M   +G+ P IEHYGCMVDLLGR+  L EA
Sbjct: 397 LMVHVHGIQPTIEHYGCMVDLLGRVGLLEEA 427



 Score = 80.1 bits (196), Expect = 5e-13
 Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 5/189 (2%)
 Frame = +3

Query: 144 ARDLVSWNTMIHGFATCGDVDTATQLFDMSSERDLVSWSSMIVGYAKSRQSNEALILFHD 323
           +R + S +T  H  A    +  A  +F      +   W+++I  YA S     AL +FH 
Sbjct: 43  SRLIASVSTNSHAQA----IPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQ 98

Query: 324 MQSANVRPDRVTMVSVLSACGDLGALGMGKIVHEYIDRNKVEIDVKLGTSLVDMYAKCGD 503
           M  A+V PD+ T    L +CG    +  G+ +H ++ +  +  D+ +  +L+ +YA CG 
Sbjct: 99  MLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGC 158

Query: 504 IENSLKVFNGMGVKDVFTWSAVIIGLANHGFGEHALDYFAKMIYGGIKP-----NGITFI 668
           IE++  + + M  +DV +W+A++   A  G  E A   F +M    ++      +G   +
Sbjct: 159 IEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGV 218

Query: 669 GVLSACSHV 695
           G+L     V
Sbjct: 219 GLLEEARRV 227