BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00036062
         (406 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containi...    94   1e-17
emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]    94   1e-17
ref|XP_003595543.1| Pentatricopeptide repeat-containing protein ...    90   2e-16
ref|XP_003560587.1| PREDICTED: pentatricopeptide repeat-containi...    84   1e-14
ref|XP_003535018.1| PREDICTED: pentatricopeptide repeat-containi...    80   1e-13

>ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 44/76 (57%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
 Frame = +3

Query: 3   SNLNVAGRVAKKMMELEPENHLSYVLLANVYKVFNQWDDAEALLKLMKDRGVKKIAGKSW 182
           +N  +A R+AK++MELEP+ HLSYVLLANVYK   +W+DA  + +LMKDRGV K+ GKSW
Sbjct: 543 TNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSW 602

Query: 183 IDIKDK-GSNLDLDNS 227
           I+ K+  GS+ D +NS
Sbjct: 603 IETKNNLGSSFDFENS 618


>emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 44/76 (57%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
 Frame = +3

Query: 3   SNLNVAGRVAKKMMELEPENHLSYVLLANVYKVFNQWDDAEALLKLMKDRGVKKIAGKSW 182
           +N  +A R+AK++MELEP+ HLSYVLLANVYK   +W+DA  + +LMKDRGV K+ GKSW
Sbjct: 602 TNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSW 661

Query: 183 IDIKDK-GSNLDLDNS 227
           I+ K+  GS+ D +NS
Sbjct: 662 IETKNNLGSSFDFENS 677


>ref|XP_003595543.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355484591|gb|AES65794.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 958

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 44/75 (58%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
 Frame = +3

Query: 3    SNLNVAGRVAKKMMELEPENHLSYVLLANVYKVFNQWDDAEALLKLMKDRGVKKIAGKSW 182
            S+   A RVA+KM+ELEP+ HLSYVLL N+Y+   +WDDA  + KLM+DRGVKK+AGKSW
Sbjct: 870  SDYRTAERVARKMIELEPDFHLSYVLLNNIYREVGRWDDALEIRKLMEDRGVKKMAGKSW 929

Query: 183  IDIKD-KGSNLDLDN 224
            ID ++ KGS+++  N
Sbjct: 930  IDSQNRKGSHINATN 944


>ref|XP_003560587.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Brachypodium distachyon]
          Length = 602

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 42/78 (53%), Positives = 54/78 (69%), Gaps = 2/78 (2%)
 Frame = +3

Query: 3   SNLNVAGRVAKKMMELEPENHLSYVLLANVYKVFNQWDDAEALLKLMKDRGVKKIAGKSW 182
           SN +VA RVAKKMMELEP+ HLSY+LL NVY+   +W+DA  + +LMK R VKK  G SW
Sbjct: 523 SNPDVAERVAKKMMELEPQYHLSYILLENVYRTVGRWEDASEIRRLMKSRKVKKDPGMSW 582

Query: 183 IDIKDKGSNL--DLDNSD 230
           ID+     ++  D+D  D
Sbjct: 583 IDVNRNKIHMCNDMDTYD 600


>ref|XP_003535018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Glycine max]
          Length = 611

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 38/69 (55%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
 Frame = +3

Query: 3   SNLNVAGRVAKKMMELEPENHLSYVLLANVYKVFNQWDDAEALLKLMKDRGVKKIAGKSW 182
           S+   A R+AKKM++LEP+ HLSYVLL N+Y+   +W++A  + KLM++RGVKK+ GKSW
Sbjct: 540 SDYVTAERIAKKMIQLEPDFHLSYVLLGNIYRAVGKWNEALEIRKLMEERGVKKVPGKSW 599

Query: 183 IDI-KDKGS 206
           I+  K KGS
Sbjct: 600 IESEKQKGS 608