BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00036061
         (359 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272572.1| PREDICTED: psbB mRNA maturation factor Mbb1,...   129   3e-28
emb|CAN76674.1| hypothetical protein VITISV_011791 [Vitis vinifera]   124   8e-27
ref|XP_002885185.1| HCF107 [Arabidopsis lyrata subsp. lyrata] gi...   117   1e-24
ref|XP_003550649.1| PREDICTED: psbB mRNA maturation factor Mbb1,...   117   1e-24
ref|XP_003529522.1| PREDICTED: psbB mRNA maturation factor Mbb1,...   117   1e-24

>ref|XP_002272572.1| PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic [Vitis
           vinifera] gi|296083248|emb|CBI22884.3| unnamed protein
           product [Vitis vinifera]
          Length = 651

 Score =  129 bits (323), Expect = 3e-28
 Identities = 70/117 (59%), Positives = 85/117 (72%)
 Frame = +1

Query: 7   QGNSVRAEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPALDSIKKLLNFEQNSYFKGQDDL 186
           QGN+VRAEEIRDLYFQQRTEVVDD SWV GFLD+ DPALDSIK+LLN +QNSY++  D  
Sbjct: 502 QGNAVRAEEIRDLYFQQRTEVVDDASWVMGFLDIIDPALDSIKRLLNLDQNSYYRIPDS- 560

Query: 187 RFMRTISNSNREESEGTSSSLINGENVEEKPPPTSSNFDLDAFAKEKLSLDTSNLEV 357
              R I  +N E+S G      +G N + K   + + F+LDAF +EKLSLD SNL+V
Sbjct: 561 --SRNIPGAN-EDSSGPGPGPSSG-NPDSKDTASENGFNLDAFIREKLSLDPSNLDV 613


>emb|CAN76674.1| hypothetical protein VITISV_011791 [Vitis vinifera]
          Length = 629

 Score =  124 bits (311), Expect = 8e-27
 Identities = 65/117 (55%), Positives = 80/117 (68%)
 Frame = +1

Query: 7   QGNSVRAEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPALDSIKKLLNFEQNSYFKGQDDL 186
           QGN+VRAEEIRDLYFQQRTEVVDD SWV GFLD+ DPALDSIK+LLN +QNSY++  D  
Sbjct: 502 QGNAVRAEEIRDLYFQQRTEVVDDASWVMGFLDIIDPALDSIKRLLNLDQNSYYRIPDSS 561

Query: 187 RFMRTISNSNREESEGTSSSLINGENVEEKPPPTSSNFDLDAFAKEKLSLDTSNLEV 357
           R +      +     G SS      N +     + + F+LDAF +EKLSLD SNL++
Sbjct: 562 RNIPGADEDSSGPGPGPSSG-----NPDSNDTASENGFNLDAFIREKLSLDPSNLDM 613


>ref|XP_002885185.1| HCF107 [Arabidopsis lyrata subsp. lyrata]
           gi|297331025|gb|EFH61444.1| HCF107 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 652

 Score =  117 bits (293), Expect = 1e-24
 Identities = 66/121 (54%), Positives = 83/121 (68%), Gaps = 3/121 (2%)
 Frame = +1

Query: 4   EQGNSVRAEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPALDSIKKLLNFEQNSYFKGQDD 183
           +QG+S RAEEIR+LYFQQRTEVVDD SWVTGFLD+ DPALD++K+LLNF QN+     D+
Sbjct: 524 DQGDSERAEEIRNLYFQQRTEVVDDASWVTGFLDIIDPALDTVKRLLNFGQNN-----DN 578

Query: 184 LRFMRTISNSNREESEGTSSSLINGE---NVEEKPPPTSSNFDLDAFAKEKLSLDTSNLE 354
            R   T+ N N     GT  S  N +   +V  +   T S F+LDAF +EKLSLD + L+
Sbjct: 579 NRLTTTLRNMN-----GTKDSQSNQQPESSVGREDTETGSGFNLDAFLREKLSLDPTKLD 633

Query: 355 V 357
           V
Sbjct: 634 V 634


>ref|XP_003550649.1| PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like
           [Glycine max]
          Length = 647

 Score =  117 bits (292), Expect = 1e-24
 Identities = 62/118 (52%), Positives = 81/118 (68%)
 Frame = +1

Query: 4   EQGNSVRAEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPALDSIKKLLNFEQNSYFKGQDD 183
           +QGNSVRAEEIR+LYFQQRTEVVDD SWV GFL + DPA+DS+K++L    NSY    D 
Sbjct: 505 DQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFLGILDPAIDSLKRILKLNPNSYNMPLDS 564

Query: 184 LRFMRTISNSNREESEGTSSSLINGENVEEKPPPTSSNFDLDAFAKEKLSLDTSNLEV 357
           L   R I+ +N+   + +S      E+ ++      S+FDLDAF K+KL+LD SNLE+
Sbjct: 565 L---RNIAGTNKNRVDSSS------EDEDDDDANGKSDFDLDAFIKQKLTLDLSNLEI 613


>ref|XP_003529522.1| PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like
           [Glycine max]
          Length = 644

 Score =  117 bits (292), Expect = 1e-24
 Identities = 61/118 (51%), Positives = 82/118 (69%)
 Frame = +1

Query: 4   EQGNSVRAEEIRDLYFQQRTEVVDDNSWVTGFLDVFDPALDSIKKLLNFEQNSYFKGQDD 183
           +QGNSVRAEEIR+LYFQQRTEVVDD SWV GFL +FDPA+DS+K++L    NSY    D 
Sbjct: 502 DQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFLGIFDPAIDSLKRILKLNPNSYNMPLDS 561

Query: 184 LRFMRTISNSNREESEGTSSSLINGENVEEKPPPTSSNFDLDAFAKEKLSLDTSNLEV 357
           L   R I+ +N+   + +S      ++ ++      ++FDLDAF K+KL+LD SNLE+
Sbjct: 562 L---RNIAGTNKNRVDSSS------DDEDDDDANGKNDFDLDAFIKQKLTLDLSNLEI 610