BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00036057
         (467 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    58   9e-07

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
 Frame = -3

Query: 309 FLLAVLKQFGFDDIWCQWVMSIISSAHISVLV--KPCG*LVTLN*GAGPGKVTQCHQCFV 136
           FLLAVL++FGFD+ +  W++ I+ SA +SVLV  K  G   T + G   G          
Sbjct: 600 FLLAVLQRFGFDEKFVHWILVILQSARLSVLVNGKAVG-FFTCSHGVRQG--DPLSPLLF 656

Query: 135 ALAKEVLNRGLTFLRTSDMINRMCSFNGTPGHFHLFFADDVYIF 4
            L +EVL+R L+   T   +  M    G     H+ +ADDV IF
Sbjct: 657 CLVEEVLSRALSMAATDGQLIPMSYCRGVSFPTHILYADDVLIF 700