BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00036049
         (320 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR17838.1| unknown [Picea sitchensis]                             100   2e-19
gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygr...    94   9e-18
ref|NP_188131.1| pentatricopeptide repeat-containing protein [Ar...    94   2e-17
dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]         94   2e-17
ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    92   3e-17

>gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 44/104 (42%), Positives = 74/104 (71%)
 Frame = +3

Query: 6   ALIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSRNVQ 185
           AL+++YAKCG++  A ++F  MP++N+V+WNA++ GY+Q+G    +L LF +M +++ ++
Sbjct: 362 ALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEM-QAQGIK 420

Query: 186 PDSFSVVTALNSCSVLTTLRNGKEIHGYVYKVGLEGVVFIGNGL 317
           PDSF++V+ L +C+    L  GK+IHGY  + G E  V +G GL
Sbjct: 421 PDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGL 464



 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 46/105 (43%), Positives = 72/105 (68%)
 Frame = +3

Query: 3   TALIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSRNV 182
           TAL  +Y KCGS+  A+QVF+ MP+R++VSWNA++ GY+QNG    +L LF++M +   +
Sbjct: 159 TALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEM-QVNGI 217

Query: 183 QPDSFSVVTALNSCSVLTTLRNGKEIHGYVYKVGLEGVVFIGNGL 317
           +P+S ++V+ +  C+ L  L  GK+IH Y  + G+E  V + NGL
Sbjct: 218 KPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGL 262



 Score = 82.4 bits (202), Expect = 4e-14
 Identities = 39/103 (37%), Positives = 66/103 (64%)
 Frame = +3

Query: 9   LIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSRNVQP 188
           L+++YAKCG++  A ++F  MP R++ SWNA++ GY+ N     +L  F +M + R ++P
Sbjct: 262 LVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRM-QVRGIKP 320

Query: 189 DSFSVVTALNSCSVLTTLRNGKEIHGYVYKVGLEGVVFIGNGL 317
           +S ++V+ L +C+ L  L  G++IHGY  + G E    +GN L
Sbjct: 321 NSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNAL 363



 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 30/75 (40%), Positives = 48/75 (64%)
 Frame = +3

Query: 3   TALIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSRNV 182
           T L+D+YAKCG++  AQ++F  MPE+++VSW  M+L Y  +G    +L LF+KM+ +   
Sbjct: 462 TGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQET-GT 520

Query: 183 QPDSFSVVTALNSCS 227
           + D  +    L +CS
Sbjct: 521 KLDHIAFTAILTACS 535


>gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
          Length = 1073

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 48/105 (45%), Positives = 69/105 (65%)
 Frame = +3

Query: 3   TALIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSRNV 182
           TALI++Y KCGS+  A++VFN M ERN+VSW AM+ GY Q+G +  +L LF K+ RS  +
Sbjct: 240 TALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSREALALFRKLIRS-GI 298

Query: 183 QPDSFSVVTALNSCSVLTTLRNGKEIHGYVYKVGLEGVVFIGNGL 317
           QP+  S  + L +C+    L  G ++H Y+ + GLE  V +GN L
Sbjct: 299 QPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNAL 343



 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 41/105 (39%), Positives = 66/105 (62%)
 Frame = +3

Query: 3   TALIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSRNV 182
           T LI +Y+KCGS+  A+ VF+ + E+++V WNAM+  Y  +     +L+LF +M +   V
Sbjct: 643 TTLIKMYSKCGSLRDAENVFSTVQEKDVVCWNAMLAAYAHSDRGQDALKLFQQM-QLEGV 701

Query: 183 QPDSFSVVTALNSCSVLTTLRNGKEIHGYVYKVGLEGVVFIGNGL 317
            PDS +  TALN+C+ LT + +GK+IH  + + G+E    + N L
Sbjct: 702 NPDSSTYSTALNACARLTAVEHGKKIHAQLKEAGMETDTRVSNSL 746



 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 43/105 (40%), Positives = 63/105 (60%)
 Frame = +3

Query: 3   TALIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSRNV 182
           TALI +YAKCGS   A++VFN MPERN++SWNA +    ++     + + F +MRR  +V
Sbjct: 441 TALISMYAKCGSPEEARKVFNQMPERNVISWNAFISCCCRHDLGKEAFQAFKQMRRD-DV 499

Query: 183 QPDSFSVVTALNSCSVLTTLRNGKEIHGYVYKVGLEGVVFIGNGL 317
            PD  + +T LNSC+    L  G+ IHG + + G+     + N L
Sbjct: 500 NPDHITFITLLNSCTSPEDLERGRYIHGKINQWGMLSNNHVANAL 544



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 37/103 (35%), Positives = 61/103 (59%)
 Frame = +3

Query: 9   LIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSRNVQP 188
           LI +Y+KCGSI  A  VF  M ++++VSWNAM+ GY  +G    + +LF +M+R   ++P
Sbjct: 141 LISMYSKCGSIEDANNVFQAMEDKDVVSWNAMISGYALHGRDQEAADLFYQMQR-EGLKP 199

Query: 189 DSFSVVTALNSCSVLTTLRNGKEIHGYVYKVGLEGVVFIGNGL 317
           +  + ++ L++C     L  G++IH  + K G E  V +   L
Sbjct: 200 NQNTFISILSACQSPIALEFGEQIHSRIAKAGYESDVNVSTAL 242



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 35/104 (33%), Positives = 56/104 (53%)
 Frame = +3

Query: 6   ALIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSRNVQ 185
           ALI +Y++CGS+  A+QVF+ +   N  +WNAM+ GY + G    +  LF  M + +  Q
Sbjct: 342 ALISMYSRCGSLANARQVFDNLRSLNRTTWNAMIAGYGE-GLMEEAFRLFRAMEQ-KGFQ 399

Query: 186 PDSFSVVTALNSCSVLTTLRNGKEIHGYVYKVGLEGVVFIGNGL 317
           PD F+  + L  C+    L  GKE+H  +   G +  + +   L
Sbjct: 400 PDKFTYASLLAICADRADLDRGKELHSQIASTGWQTDLTVATAL 443



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 33/93 (35%), Positives = 53/93 (56%)
 Frame = +3

Query: 6   ALIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSRNVQ 185
           ALI +Y +CG++  A++VF  +  R++ SWNAM+    Q+G    + +LF K  RS   +
Sbjct: 543 ALISMYGRCGNLADAREVFYRIRRRDLGSWNAMIAANVQHGANGSAFDLFRKY-RSEGGK 601

Query: 186 PDSFSVVTALNSCSVLTTLRNGKEIHGYVYKVG 284
            D ++ +  L + + L  L  G+ IHG V K G
Sbjct: 602 GDKYTFINVLRAVANLEDLDAGRMIHGLVEKGG 634



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 29/76 (38%), Positives = 50/76 (65%)
 Frame = +3

Query: 6   ALIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSRNVQ 185
           +LI++Y++CG +  A+QVF  M  R+I SWNA++ GY QNG   ++LE +  M R+ ++ 
Sbjct: 745 SLIEMYSRCGCLCSAKQVFEKMLSRDINSWNALIAGYCQNGQGNIALEYYELMLRA-SIV 803

Query: 186 PDSFSVVTALNSCSVL 233
           P+  +  + L+S + L
Sbjct: 804 PNKATFTSILSSYAQL 819


>ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218546753|sp|P0C898.1|PP232_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At3g15130 gi|332642102|gb|AEE75623.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 689

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 46/103 (44%), Positives = 66/103 (64%)
 Frame = +3

Query: 9   LIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSRNVQP 188
           LID+Y KC     A +VF+ MPERN+VSW+A+M G+  NG    SL LF++M R + + P
Sbjct: 47  LIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGR-QGIYP 105

Query: 189 DSFSVVTALNSCSVLTTLRNGKEIHGYVYKVGLEGVVFIGNGL 317
           + F+  T L +C +L  L  G +IHG+  K+G E +V +GN L
Sbjct: 106 NEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSL 148



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 33/94 (35%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
 Frame = +3

Query: 6   ALIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSR-NV 182
           +L+D+Y+KCG I  A++VF  + +R+++SWNAM+ G+   G    +L+ F  M+ +    
Sbjct: 147 SLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKE 206

Query: 183 QPDSFSVVTALNSCSVLTTLRNGKEIHGYVYKVG 284
           +PD F++ + L +CS    +  GK+IHG++ + G
Sbjct: 207 RPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSG 240



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 32/97 (32%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
 Frame = +3

Query: 6   ALIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSRNVQ 185
           +L+D+Y KCG +F A++ F+ + E+ ++SW++++LGY Q G  + ++ LF ++ +  N Q
Sbjct: 252 SLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRL-QELNSQ 310

Query: 186 PDSFSVVTALNSCSVLTTLRNGKEIHGYVYKV--GLE 290
            DSF++ + +   +    LR GK++     K+  GLE
Sbjct: 311 IDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLE 347



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 25/85 (29%), Positives = 52/85 (61%)
 Frame = +3

Query: 6   ALIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSRNVQ 185
           +++D+Y KCG +  A++ F  M  ++++SW  ++ GY ++G    S+ +F +M R  N++
Sbjct: 353 SVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLR-HNIE 411

Query: 186 PDSFSVVTALNSCSVLTTLRNGKEI 260
           PD    +  L++CS    ++ G+E+
Sbjct: 412 PDEVCYLAVLSACSHSGMIKEGEEL 436


>dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 46/103 (44%), Positives = 66/103 (64%)
 Frame = +3

Query: 9   LIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSRNVQP 188
           LID+Y KC     A +VF+ MPERN+VSW+A+M G+  NG    SL LF++M R + + P
Sbjct: 418 LIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGR-QGIYP 476

Query: 189 DSFSVVTALNSCSVLTTLRNGKEIHGYVYKVGLEGVVFIGNGL 317
           + F+  T L +C +L  L  G +IHG+  K+G E +V +GN L
Sbjct: 477 NEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSL 519



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 33/94 (35%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
 Frame = +3

Query: 6   ALIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSR-NV 182
           +L+D+Y+KCG I  A++VF  + +R+++SWNAM+ G+   G    +L+ F  M+ +    
Sbjct: 518 SLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKE 577

Query: 183 QPDSFSVVTALNSCSVLTTLRNGKEIHGYVYKVG 284
           +PD F++ + L +CS    +  GK+IHG++ + G
Sbjct: 578 RPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSG 611



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 32/97 (32%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
 Frame = +3

Query: 6   ALIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSRNVQ 185
           +L+D+Y KCG +F A++ F+ + E+ ++SW++++LGY Q G  + ++ LF ++ +  N Q
Sbjct: 623 SLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRL-QELNSQ 681

Query: 186 PDSFSVVTALNSCSVLTTLRNGKEIHGYVYKV--GLE 290
            DSF++ + +   +    LR GK++     K+  GLE
Sbjct: 682 IDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLE 718



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 25/85 (29%), Positives = 52/85 (61%)
 Frame = +3

Query: 6   ALIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSRNVQ 185
           +++D+Y KCG +  A++ F  M  ++++SW  ++ GY ++G    S+ +F +M R  N++
Sbjct: 724 SVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLR-HNIE 782

Query: 186 PDSFSVVTALNSCSVLTTLRNGKEI 260
           PD    +  L++CS    ++ G+E+
Sbjct: 783 PDEVCYLAVLSACSHSGMIKEGEEL 807


>ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 46/104 (44%), Positives = 66/104 (63%)
 Frame = +3

Query: 6   ALIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSRNVQ 185
           ALI +Y KCG I  A+ +F+ MP+R+ +SWNAM+ GY +NGG L  LELF+ M R  +V 
Sbjct: 238 ALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFS-MMRELSVD 296

Query: 186 PDSFSVVTALNSCSVLTTLRNGKEIHGYVYKVGLEGVVFIGNGL 317
           PD  ++ T  ++C +L   R G+ +HGYV K    G + + N L
Sbjct: 297 PDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSL 340



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 33/104 (31%), Positives = 64/104 (61%)
 Frame = +3

Query: 6   ALIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSRNVQ 185
           +LID+Y+KC  +  A +VF  +  +N+VSW +++LG   N  +  +L  F +M+ S  ++
Sbjct: 440 SLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES--MK 497

Query: 186 PDSFSVVTALNSCSVLTTLRNGKEIHGYVYKVGLEGVVFIGNGL 317
           P+S ++++ L++C+ +  L  GKEIH +  + G+    F+ N +
Sbjct: 498 PNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAI 541



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 33/104 (31%), Positives = 62/104 (59%)
 Frame = +3

Query: 6   ALIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSRNVQ 185
           AL+ ++ + G++  A  VF  M ER++ SWN ++ GY + G    +L L+ +M  +  ++
Sbjct: 137 ALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE-IR 195

Query: 186 PDSFSVVTALNSCSVLTTLRNGKEIHGYVYKVGLEGVVFIGNGL 317
           P+ ++  + L +C+ ++ +  GKEIH +V + G E  V +GN L
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNAL 239



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 28/84 (33%), Positives = 48/84 (57%)
 Frame = +3

Query: 6   ALIDVYAKCGSIFPAQQVFNGMPERNIVSWNAMMLGYNQNGGALVSLELFAKMRRSRNVQ 185
           A++D+Y +CG   PA   FN   ++++ +WN ++ GY Q G A +++ELF KM     + 
Sbjct: 540 AILDMYVRCGRKVPALNQFNSQ-KKDVTAWNILLTGYAQQGQAKLAVELFDKM-LELEIH 597

Query: 186 PDSFSVVTALNSCSVLTTLRNGKE 257
           PD  + ++ L +CS    +  G E
Sbjct: 598 PDEITFISLLCACSKSGMVTEGLE 621