BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00036033
         (803 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containi...   197   3e-48
ref|XP_002334199.1| predicted protein [Populus trichocarpa] gi|2...   171   1e-40
ref|XP_003554352.1| PREDICTED: pentatricopeptide repeat-containi...   167   2e-39
ref|XP_002326162.1| predicted protein [Populus trichocarpa] gi|2...   167   2e-39
ref|NP_195903.2| pentatricopeptide repeat-containing protein [Ar...   166   6e-39

>ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
            chloroplastic [Vitis vinifera]
            gi|297741486|emb|CBI32618.3| unnamed protein product
            [Vitis vinifera]
          Length = 842

 Score =  197 bits (500), Expect = 3e-48
 Identities = 108/208 (51%), Positives = 150/208 (72%), Gaps = 7/208 (3%)
 Frame = -3

Query: 801  RKAGYSPYDYFLKELVEEWCEGVITYNNQDEGVVGLSDSLDKTDREKSQSLLLEKVAAHL 622
            RKAGY   DY+LKEL+EEWCEGVI  NN ++       S+++ D  + QSLLLEKVAAHL
Sbjct: 634  RKAGYKSNDYYLKELIEEWCEGVIQDNNLNQSKFS---SVNRADWGRPQSLLLEKVAAHL 690

Query: 621  QRDIAQSVAVDLRGLTKVEARIVVLSVLRMIKEKYRIGDPIEDDVDIILEVREESAGATN 442
            Q+ +A+S+A+DL+GLT+VEARIVVL+VLRMIKE Y +G PI+DD+ IIL +++  A    
Sbjct: 691  QKSVAESLAIDLQGLTQVEARIVVLAVLRMIKENYILGHPIKDDILIILGIKKVDANLVE 750

Query: 441  Y-SEVQDAVVKLLRDELGLCIISTGPRVS-PIRNDVGNPPDTDLIHEKVAMK-----VLE 283
            + S V+ A++KLL+DELGL +   GP+++   R ++G PP +D   ++   +      LE
Sbjct: 751  HESPVKGAIIKLLQDELGLEVAFAGPKIALDKRINLGGPPGSDPDWQEALGRNRLPTELE 810

Query: 282  SSARRPAILRRVKVTRESMYQWLQKRVG 199
            SS RRPA+L+R KVTR+S+  WLQ+RVG
Sbjct: 811  SSTRRPAVLQRFKVTRKSLDHWLQRRVG 838


>ref|XP_002334199.1| predicted protein [Populus trichocarpa] gi|222870080|gb|EEF07211.1|
           predicted protein [Populus trichocarpa]
          Length = 215

 Score =  171 bits (434), Expect = 1e-40
 Identities = 95/201 (47%), Positives = 140/201 (69%), Gaps = 4/201 (1%)
 Frame = -3

Query: 789 YSPYDYFLKELVEEWCEGVITYNNQDEGVVGLSDSLDKTDREKSQSLLLEKVAAHLQRDI 610
           Y   DY+LK+L+EEWCEGVI  NNQ +G      S  +TD  + +SLLLEKVAAHLQ +I
Sbjct: 14  YKSNDYYLKQLIEEWCEGVIQDNNQIQGGFA---SCKRTDLGRPRSLLLEKVAAHLQNNI 70

Query: 609 AQSVAVDLRGLTKVEARIVVLSVLRMIKEKYRIGDPIEDDVDIILEVREESAGATNYSEV 430
           ++++A+DL+GLTKVEARIVVL+VLRMIKE Y +G  +++D+ I L+V +    +   SEV
Sbjct: 71  SENLAIDLQGLTKVEARIVVLAVLRMIKENYTLGYSVKEDMWITLDVSKVDPASKRDSEV 130

Query: 429 QDAVVKLLRDELGLCIISTGP-RVSPIRNDVGN--PPDTDLIHEKVAMKVLESSARRPAI 259
           ++A+++LLR+ELGL ++   P  +  I+ D  +   P  DL+        + SS RRP +
Sbjct: 131 KNAIIELLRNELGLEVLVAVPGHLDDIKTDSKSSLDPGPDLVVRLARNNKMASSTRRPIV 190

Query: 258 L-RRVKVTRESMYQWLQKRVG 199
           + +R+KV R+S+++WLQ+RVG
Sbjct: 191 VTQRLKVRRKSLHEWLQRRVG 211


>ref|XP_003554352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
            chloroplastic-like [Glycine max]
          Length = 811

 Score =  167 bits (424), Expect = 2e-39
 Identities = 93/204 (45%), Positives = 138/204 (67%), Gaps = 5/204 (2%)
 Frame = -3

Query: 801  RKAGYSPYDYFLKELVEEWCEGVITYNNQDEGVVGLSDSLDKTDREKSQSLLLEKVAAHL 622
            RKAGY P DY+L+EL+EEWCEGVI  N + +G    S+   K++ E+ QSLLLEK+AAHL
Sbjct: 613  RKAGYKPNDYYLEELIEEWCEGVIQNNREKQGEFSSSN---KSESERPQSLLLEKIAAHL 669

Query: 621  QRDIAQSVAVDLRGLTKVEARIVVLSVLRMIKEKYRIGDPIEDDVDIIL-EVREESAGAT 445
             + +A  +A+D++GLTKVEAR+VVL+VLRMIKE Y +G  + DD+ II+   + +   + 
Sbjct: 670  LKRVADILAIDVQGLTKVEARLVVLAVLRMIKENYGLGHSVNDDILIIIGATKVDENPSK 729

Query: 444  NYSEVQDAVVKLLRDELGLCIISTGPRVSPIRNDVGN---PPDTDL-IHEKVAMKVLESS 277
            +  EVQ+A++KLLR+ELGL +     R++   +D  N   P  ++L I  +     L   
Sbjct: 730  HILEVQEAIIKLLRNELGLEVFPAKTRLA--LSDTANLEYPNFSNLSIEAQPGENALGFQ 787

Query: 276  ARRPAILRRVKVTRESMYQWLQKR 205
             RRP +L R+KVT++S+Y+WL ++
Sbjct: 788  TRRPGVLVRLKVTKKSLYRWLHRK 811


>ref|XP_002326162.1| predicted protein [Populus trichocarpa] gi|222833355|gb|EEE71832.1|
            predicted protein [Populus trichocarpa]
          Length = 828

 Score =  167 bits (423), Expect = 2e-39
 Identities = 93/201 (46%), Positives = 135/201 (67%)
 Frame = -3

Query: 801  RKAGYSPYDYFLKELVEEWCEGVITYNNQDEGVVGLSDSLDKTDREKSQSLLLEKVAAHL 622
            RKAGY   DY+LK+L+EEWCEGVI  NNQ +G      S  +TD  + +SLLLEKVAAHL
Sbjct: 645  RKAGYKSNDYYLKQLIEEWCEGVIQDNNQIQGGFA---SCKRTDLGRPRSLLLEKVAAHL 701

Query: 621  QRDIAQSVAVDLRGLTKVEARIVVLSVLRMIKEKYRIGDPIEDDVDIILEVREESAGATN 442
            Q +I++++A+DL+GLTKVEARIVVL+VLRMIKE Y +G  +++D+ I L+V +    +  
Sbjct: 702  QNNISENLAIDLQGLTKVEARIVVLAVLRMIKENYTLGYSVKEDMWITLDVSKVDPASKR 761

Query: 441  YSEVQDAVVKLLRDELGLCIISTGPRVSPIRNDVGNPPDTDLIHEKVAMKVLESSARRPA 262
             SEV++A+++LLR+ELGL ++   P         G+  D         +K    S+  P 
Sbjct: 762  DSEVKNAIIELLRNELGLEVLVAVP---------GHLDD---------IKTDSKSSLDPV 803

Query: 261  ILRRVKVTRESMYQWLQKRVG 199
            + +R+KV R+S+++WLQ+R G
Sbjct: 804  VTQRLKVRRKSLHEWLQRRAG 824


>ref|NP_195903.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|332278227|sp|Q8GYL7.3|PP361_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At5g02830, chloroplastic; Flags: Precursor
            gi|332003140|gb|AED90523.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 852

 Score =  166 bits (420), Expect = 6e-39
 Identities = 99/200 (49%), Positives = 129/200 (64%), Gaps = 1/200 (0%)
 Frame = -3

Query: 801  RKAGYSPYDYFLKELVEEWCEGVITYNNQDEGVVGLSDSLDKTDREKSQSLLLEKVAAHL 622
            R AGY P D+FLKEL+EEWCEGVI  N Q +  +  SD  +  +  +  SLL+EKVA H+
Sbjct: 659  RNAGYKPNDHFLKELIEEWCEGVIQENGQSQDKI--SDQ-EGDNAGRPVSLLIEKVATHM 715

Query: 621  QRDIAQSVAVDLRGLTKVEARIVVLSVLRMIKEKYRIGDPIEDDVDIILEVRE-ESAGAT 445
            Q   A ++A+DL+GLTK+EAR+VVL+VLRMIKE Y  GD + DDV II+   E  +    
Sbjct: 716  QERTAGNLAIDLQGLTKIEARLVVLAVLRMIKEDYMRGDVVIDDVLIIIGTDEANTVSGK 775

Query: 444  NYSEVQDAVVKLLRDELGLCIISTGPRVSPIRNDVGNPPDTDLIHEKVAMKVLESSARRP 265
                VQ+A+VKLLRDEL L ++  G R   I  D     D D  + K  + +  SS RRP
Sbjct: 776  QEITVQEALVKLLRDELSLVVLPAGQR--NIIQDAHCVDDADQENTKSFVSI--SSTRRP 831

Query: 264  AILRRVKVTRESMYQWLQKR 205
            AIL R+ VT+ S+YQWLQ+R
Sbjct: 832  AILERLMVTKASLYQWLQRR 851