BLASTX nr result
ID: Coptis25_contig00035983
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00035983
(556 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003588268.1| NADH-ubiquinone oxidoreductase chain [Medica... 112 3e-23
ref|XP_002534687.1| NADH-ubiquinone oxidoreductase chain, putati... 106 2e-21
ref|YP_006280924.1| NADH dehydrogenase subunit 4 (mitochondrion)... 64 2e-08
ref|YP_005090381.1| NADH dehydrogenase subunit 4 (mitochondrion)... 62 8e-08
gb|AEJ91284.1| NADH dehydrogenase subunit 4, partial (mitochondr... 62 8e-08
>ref|XP_003588268.1| NADH-ubiquinone oxidoreductase chain [Medicago truncatula]
gi|355477316|gb|AES58519.1| NADH-ubiquinone
oxidoreductase chain [Medicago truncatula]
Length = 556
Score = 112 bits (281), Expect = 3e-23
Identities = 69/124 (55%), Positives = 72/124 (58%)
Frame = -3
Query: 374 PLVRLASERFFRAGISRNASSIVRTTREAKDSRVQAENTCIDSGLMTRADGRKLGTEPYD 195
PLVRLASERFFRA + RKL P
Sbjct: 275 PLVRLASERFFRARSGPGPTG-------------------------GHLPQRKLHCSP-- 307
Query: 194 APVSHTVL*EGSGYPLELRPTTTGQFRFGATPYSTIIIGVWGSRQRKIKAAYQFFLYTSL 15
P + E SGY LELRPTTTG+FRFGATPYSTIIIGVWGSRQRKIKAAYQFFLYT L
Sbjct: 308 -PPDKQKIRESSGYLLELRPTTTGKFRFGATPYSTIIIGVWGSRQRKIKAAYQFFLYTLL 366
Query: 14 GSVF 3
GSVF
Sbjct: 367 GSVF 370
>ref|XP_002534687.1| NADH-ubiquinone oxidoreductase chain, putative [Ricinus communis]
gi|223524771|gb|EEF27701.1| NADH-ubiquinone
oxidoreductase chain, putative [Ricinus communis]
Length = 366
Score = 106 bits (265), Expect = 2e-21
Identities = 57/79 (72%), Positives = 58/79 (73%)
Frame = -3
Query: 239 MTRADGRKLGTEPYDAPVSHTVL*EGSGYPLELRPTTTGQFRFGATPYSTIIIGVWGSRQ 60
MTRAD G +G GY LELRPTTTGQFRFGATPYSTIIIGVWGSRQ
Sbjct: 1 MTRADDGSSGRSRMMRKSHVRFPEKGVGYLLELRPTTTGQFRFGATPYSTIIIGVWGSRQ 60
Query: 59 RKIKAAYQFFLYTSLGSVF 3
RKIKAAYQFFLYT LGSVF
Sbjct: 61 RKIKAAYQFFLYTLLGSVF 79
>ref|YP_006280924.1| NADH dehydrogenase subunit 4 (mitochondrion) [Spirodela polyrhiza]
gi|385252625|gb|AFI54933.1| NADH dehydrogenase subunit 4
(mitochondrion) [Spirodela polyrhiza]
Length = 493
Score = 63.5 bits (153), Expect = 2e-08
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = -3
Query: 107 ATPYSTIIIGVWGSRQRKIKAAYQFFLYTSLGSVF 3
+ P IIIGVWGSRQRKIKAAYQFFLYTSLGSVF
Sbjct: 148 SVPIPMIIIGVWGSRQRKIKAAYQFFLYTSLGSVF 182
>ref|YP_005090381.1| NADH dehydrogenase subunit 4 (mitochondrion) [Phoenix dactylifera]
gi|343478433|gb|AEM43921.1| NADH dehydrogenase subunit 4
(mitochondrion) [Phoenix dactylifera]
Length = 495
Score = 61.6 bits (148), Expect = 8e-08
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -3
Query: 89 IIIGVWGSRQRKIKAAYQFFLYTSLGSVF 3
IIIGVWGSRQRKIKAAYQFFLYTSLGSVF
Sbjct: 155 IIIGVWGSRQRKIKAAYQFFLYTSLGSVF 183
>gb|AEJ91284.1| NADH dehydrogenase subunit 4, partial (mitochondrion) [Olsynium
biflorum] gi|339742417|gb|AEJ91285.1| NADH
dehydrogenase subunit 4, partial (mitochondrion)
[Olsynium douglasii] gi|339742419|gb|AEJ91286.1| NADH
dehydrogenase subunit 4, partial (mitochondrion)
[Olsynium scirpoideum] gi|339742421|gb|AEJ91287.1| NADH
dehydrogenase subunit 4, partial (mitochondrion)
[Sisyrinchium acre] gi|339742425|gb|AEJ91289.1| NADH
dehydrogenase subunit 4, partial (mitochondrion)
[Sisyrinchium cf. nervosum SP016]
gi|339742427|gb|AEJ91290.1| NADH dehydrogenase subunit
4, partial (mitochondrion) [Sisyrinchium chapelcoense]
gi|339742437|gb|AEJ91295.1| NADH dehydrogenase subunit
4, partial (mitochondrion) [Sisyrinchium californicum]
gi|339742439|gb|AEJ91296.1| NADH dehydrogenase subunit
4, partial (mitochondrion) [Sisyrinchium californicum]
gi|339742445|gb|AEJ91299.1| NADH dehydrogenase subunit
4, partial (mitochondrion) [Sisyrinchium angustissimum]
gi|339742451|gb|AEJ91302.1| NADH dehydrogenase subunit
4, partial (mitochondrion) [Sisyrinchium cuspidatum]
gi|339742459|gb|AEJ91306.1| NADH dehydrogenase subunit
4, partial (mitochondrion) [Sisyrinchium macrocarpum
subsp. macrocarpum] gi|339742463|gb|AEJ91308.1| NADH
dehydrogenase subunit 4, partial (mitochondrion)
[Sisyrinchium macrophyllum] gi|339742507|gb|AEJ91330.1|
NADH dehydrogenase subunit 4, partial (mitochondrion)
[Sisyrinchium striatum] gi|339742517|gb|AEJ91335.1|
NADH dehydrogenase subunit 4, partial (mitochondrion)
[Sisyrinchium convolutum] gi|339742557|gb|AEJ91355.1|
NADH dehydrogenase subunit 4, partial (mitochondrion)
[Orthrosanthus monadelphus] gi|339742561|gb|AEJ91357.1|
NADH dehydrogenase subunit 4, partial (mitochondrion)
[Sisyrinchium aff. tinctorium SP179]
gi|339742563|gb|AEJ91358.1| NADH dehydrogenase subunit
4, partial (mitochondrion) [Sisyrinchium pearcei]
gi|339742565|gb|AEJ91359.1| NADH dehydrogenase subunit
4, partial (mitochondrion) [Sisyrinchium longipes]
gi|339742567|gb|AEJ91360.1| NADH dehydrogenase subunit
4, partial (mitochondrion) [Sisyrinchium graminifolium]
gi|339742569|gb|AEJ91361.1| NADH dehydrogenase subunit
4, partial (mitochondrion) [Sisyrinchium tenuifolium]
gi|339742577|gb|AEJ91365.1| NADH dehydrogenase subunit
4, partial (mitochondrion) [Olsynium junceum]
gi|339742587|gb|AEJ91370.1| NADH dehydrogenase subunit
4, partial (mitochondrion) [Sisyrinchium convallium]
gi|339742593|gb|AEJ91373.1| NADH dehydrogenase subunit
4, partial (mitochondrion) [Sisyrinchium macrocarpum
subsp. laetum] gi|339742595|gb|AEJ91374.1| NADH
dehydrogenase subunit 4, partial (mitochondrion)
[Sisyrinchium arizonicum] gi|339742597|gb|AEJ91375.1|
NADH dehydrogenase subunit 4, partial (mitochondrion)
[Sisyrinchium jamesonii] gi|339742603|gb|AEJ91378.1|
NADH dehydrogenase subunit 4, partial (mitochondrion)
[Sisyrinchium tinctorium] gi|339742605|gb|AEJ91379.1|
NADH dehydrogenase subunit 4, partial (mitochondrion)
[Sisyrinchium papillosum] gi|339742607|gb|AEJ91380.1|
NADH dehydrogenase subunit 4, partial (mitochondrion)
[Sisyrinchium mandonii] gi|339742609|gb|AEJ91381.1|
NADH dehydrogenase subunit 4, partial (mitochondrion)
[Sisyrinchium aff. californicum SP809]
gi|339742613|gb|AEJ91383.1| NADH dehydrogenase subunit
4, partial (mitochondrion) [Sisyrinchium elmeri]
gi|339742619|gb|AEJ91386.1| NADH dehydrogenase subunit
4, partial (mitochondrion) [Sisyrinchium arenarium
subsp. arenarium] gi|339742621|gb|AEJ91387.1| NADH
dehydrogenase subunit 4, partial (mitochondrion)
[Sisyrinchium aff. graminifolium SP821]
gi|339742623|gb|AEJ91388.1| NADH dehydrogenase subunit
4, partial (mitochondrion) [Sisyrinchium aff.
graminifolium SP826] gi|339742627|gb|AEJ91390.1| NADH
dehydrogenase subunit 4, partial (mitochondrion)
[Olsynium junceum] gi|339742629|gb|AEJ91391.1| NADH
dehydrogenase subunit 4, partial (mitochondrion)
[Olsynium junceum subsp. colchaguense]
Length = 93
Score = 61.6 bits (148), Expect = 8e-08
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -3
Query: 89 IIIGVWGSRQRKIKAAYQFFLYTSLGSVF 3
IIIGVWGSRQRKIKAAYQFFLYTSLGSVF
Sbjct: 2 IIIGVWGSRQRKIKAAYQFFLYTSLGSVF 30