BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035964
         (628 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    85   1e-14
gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    83   5e-14
ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    78   2e-12
gb|ABN08796.1| Ribonuclease H [Medicago truncatula]                    78   2e-12
gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    75   8e-12

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 85.1 bits (209), Expect = 1e-14
 Identities = 57/161 (35%), Positives = 81/161 (50%), Gaps = 1/161 (0%)
 Frame = -2

Query: 513  NIKGRARPSNNIKEVSWIPPNYGFVKANTDGSSVGNPGLGGAGIIFRDHNAQVIGVKAYG 334
            ++  R R   +I  V W  P+   +K NTDGS VG  GL   G +FRD +   +G  +  
Sbjct: 999  SVSPRHRKYKDIILVLWKNPSPPLLKVNTDGSVVG--GLAACGGLFRDSSGSFLGAFSCN 1056

Query: 333  LGITTNFDAECYXXXXXXXXXXLNGWVNLWLESDSIAATLAFTRVK-IPWVLKARWL*AT 157
            +G+ + F AE             +GW NLWLESDS +A + F+    + W+L+ RW  A 
Sbjct: 1057 IGLASVFHAETLAFILALEHAAHHGWRNLWLESDSTSALMIFSNSSLVQWLLRNRWHNAQ 1116

Query: 156  QRPSQWRISHIYREANFEADVVAKMGTTLSQGQGLWSTSRP 34
            +   Q   SHI  E N  AD +A MG  + QG  +W  + P
Sbjct: 1117 RLGIQVISSHILHEGNRCADNLANMGHGI-QG-SIWLETLP 1155


>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 82.8 bits (203), Expect = 5e-14
 Identities = 51/157 (32%), Positives = 73/157 (46%), Gaps = 3/157 (1%)
 Frame = -2

Query: 486 NNIKEVSWIPPNYGFVKANTDGSSVGNPGLGGAGIIFRDHNAQVIGVKAYGLGITTNFDA 307
           N  +E+ W+PP+ G +K N DGS VG+P  G  G+IFR       G  A  +G  T  +A
Sbjct: 238 NPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALEA 297

Query: 306 ECYXXXXXXXXXXLNGWVNLWLESDSIAATLAF-TRVKIPWVLKARWL*ATQ--RPSQWR 136
           E                 N+W+E+DS+    AF     +PW +  RW       R  +  
Sbjct: 298 EYSACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTGVPWKMHIRWHNCLLFCRSIRSL 357

Query: 135 ISHIYREANFEADVVAKMGTTLSQGQGLWSTSRPPFL 25
            +H+ RE N  AD +AK G    QG  L+S+    F+
Sbjct: 358 CTHVNREGNLVADALAKNG----QGLALYSSHPLAFI 390


>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
           gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
           protein ccsA [Medicago truncatula]
          Length = 666

 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 52/153 (33%), Positives = 71/153 (46%), Gaps = 3/153 (1%)
 Frame = -2

Query: 474 EVSWIPPNYGFVKANTDGSSVGNPGLGGAGIIFRDHNAQVIGVKAYGLGITTNFDAECYX 295
           ++ W PP    VK N DGSSVG    G  GI+ RD N   +G  +  +G  T  +AE   
Sbjct: 213 DIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIRDSNHHFLGAISSNIGNATPLEAEFCA 272

Query: 294 XXXXXXXXXLNGWVNLWLESDSIAATLAFTR-VKIPWVLKARWL*ATQRPSQWRIS--HI 124
                        +++ LE+DS+    AF + + +PW ++ARW            S  HI
Sbjct: 273 GMMAMEKAQEMQLMHVCLETDSLKVVNAFNKGLGVPWQMRARWQNCWDFCDSISCSCVHI 332

Query: 123 YREANFEADVVAKMGTTLSQGQGLWSTSRPPFL 25
            RE N  AD +AK G  LS       TS PPF+
Sbjct: 333 LREGNMVADALAKHGQGLSLYYTQLWTSPPPFI 365


>gb|ABN08796.1| Ribonuclease H [Medicago truncatula]
          Length = 221

 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 52/153 (33%), Positives = 71/153 (46%), Gaps = 3/153 (1%)
 Frame = -2

Query: 474 EVSWIPPNYGFVKANTDGSSVGNPGLGGAGIIFRDHNAQVIGVKAYGLGITTNFDAECYX 295
           ++ W PP    VK N DGSSVG    G  GI+ RD N   +G  +  +G  T  +AE   
Sbjct: 50  DIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIRDSNHHFLGAISSNIGNATPLEAEFCA 109

Query: 294 XXXXXXXXXLNGWVNLWLESDSIAATLAFTR-VKIPWVLKARWL*ATQRPSQWRIS--HI 124
                        +++ LE+DS+    AF + + +PW ++ARW            S  HI
Sbjct: 110 GMMAMEKAQEMQLMHVCLETDSLKVVNAFNKGLGVPWQMRARWQNCWDFCDSISCSCVHI 169

Query: 123 YREANFEADVVAKMGTTLSQGQGLWSTSRPPFL 25
            RE N  AD +AK G  LS       TS PPF+
Sbjct: 170 LREGNMVADALAKHGQGLSLYYTQLWTSPPPFI 202


>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 75.5 bits (184), Expect = 8e-12
 Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
 Frame = -2

Query: 459 PPNYGFVKANTDGSSVGNPGLGGAGIIFRDHNAQVIGVKAYGLGITTNFDAECYXXXXXX 280
           P   G VK N DGS+ G P  G  G +FR+     +G  A  +G  T F AE        
Sbjct: 5   PAVQGRVKINLDGSAFGAPSCGATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAAIFAI 64

Query: 279 XXXXLNGWVNLWLESDSIAATLAFTRVK-IPWVLKARW--L*ATQRPSQWRISHIYREAN 109
                    ++WLE+DS     AF+  + +PW L+ RW    A  +  +   +HI+RE N
Sbjct: 65  EKSIEYNLRDIWLETDSKLVVKAFSSSEHVPWQLRTRWNNCLALAQKIKCVCTHIHREGN 124

Query: 108 FEADVVAKMGTTLSQGQGLWSTSRPPFLKC 19
             AD +AK G +L+     W +S P F  C
Sbjct: 125 AGADSLAKNGKSLALLTSQWWSSSPLFFFC 154