BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035939
         (235 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]              109   3e-22
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]   104   7e-21
emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]   103   1e-20
emb|CCH50966.1| T4.5 [Malus x robusta]                                103   1e-20
gb|AAF99727.1|AC004557_6 F17L21.7 [Arabidopsis thaliana]              102   4e-20

>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score =  109 bits (272), Expect = 3e-22
 Identities = 47/78 (60%), Positives = 61/78 (78%)
 Frame = -2

Query: 234 SCPHTPEQNGVVERKHRHILDMSRTLISQSYIPSKYWVDLFSTSVYLINRLPSSSLNFIS 55
           SCP  PEQNG+ ERKHRHI+D   TL++ +++PS YWVD F+T+VY+INRLPS  LN+ S
Sbjct: 549 SCPKHPEQNGLAERKHRHIVDTGLTLLAHAHMPSTYWVDSFNTAVYIINRLPSRVLNYAS 608

Query: 54  PWEKVFHRKPNYSRLKTF 1
           P+E++FHR P Y  LK F
Sbjct: 609 PYEQLFHRVPQYHSLKVF 626


>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
          Length = 1262

 Score =  104 bits (260), Expect = 7e-21
 Identities = 45/78 (57%), Positives = 62/78 (79%)
 Frame = -2

Query: 234 SCPHTPEQNGVVERKHRHILDMSRTLISQSYIPSKYWVDLFSTSVYLINRLPSSSLNFIS 55
           SCPHT +QNG++ERKHRHI+++  TL++Q+ +P KYW D FST+V+LINRLP+  L    
Sbjct: 466 SCPHTSKQNGIIERKHRHIVELGLTLLAQASLPLKYWPDAFSTAVFLINRLPTEVLKQKC 525

Query: 54  PWEKVFHRKPNYSRLKTF 1
           P+E +F+ KPNYS+LK F
Sbjct: 526 PYEFLFNSKPNYSQLKVF 543


>emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]
          Length = 1242

 Score =  103 bits (258), Expect = 1e-20
 Identities = 45/78 (57%), Positives = 61/78 (78%)
 Frame = -2

Query: 234 SCPHTPEQNGVVERKHRHILDMSRTLISQSYIPSKYWVDLFSTSVYLINRLPSSSLNFIS 55
           SCPHT +QNG++ERKHRHI+++  TL++Q+ +P KYW D FST V+LINRLP+  L    
Sbjct: 712 SCPHTSKQNGIIERKHRHIVELGLTLLAQASLPLKYWPDAFSTXVFLINRLPTEVLKQKC 771

Query: 54  PWEKVFHRKPNYSRLKTF 1
           P+E +F+ KPNYS+LK F
Sbjct: 772 PYEFLFNSKPNYSQLKVF 789


>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score =  103 bits (257), Expect = 1e-20
 Identities = 47/78 (60%), Positives = 58/78 (74%)
 Frame = -2

Query: 234  SCPHTPEQNGVVERKHRHILDMSRTLISQSYIPSKYWVDLFSTSVYLINRLPSSSLNFIS 55
            SC HT EQNG  ERKHRH+++M RTL+SQS +P+++WV+ F T VYLINRLP  S + IS
Sbjct: 882  SCLHTSEQNGCAERKHRHVVEMGRTLLSQSDLPTQFWVEAFQTVVYLINRLPPQS-SVIS 940

Query: 54   PWEKVFHRKPNYSRLKTF 1
            PWE +FH  P Y  LK F
Sbjct: 941  PWELLFHASPKYHTLKAF 958


>gb|AAF99727.1|AC004557_6 F17L21.7 [Arabidopsis thaliana]
          Length = 1534

 Score =  102 bits (253), Expect = 4e-20
 Identities = 46/78 (58%), Positives = 57/78 (73%)
 Frame = -2

Query: 234 SCPHTPEQNGVVERKHRHILDMSRTLISQSYIPSKYWVDLFSTSVYLINRLPSSSLNFIS 55
           S PHTPE NG+ ERKHRHIL+   TL++Q+ IP+ YW   F T+VYLINRLPSS LN  S
Sbjct: 707 SLPHTPEHNGIAERKHRHILETGLTLLTQASIPTSYWTYAFGTAVYLINRLPSSVLNNES 766

Query: 54  PWEKVFHRKPNYSRLKTF 1
           P+ K+F   PNY +L+ F
Sbjct: 767 PYSKLFKTSPNYLKLRVF 784