BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035923
         (508 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containi...   172   3e-41
emb|CBI30968.3| unnamed protein product [Vitis vinifera]              172   3e-41
ref|XP_002331638.1| predicted protein [Populus trichocarpa] gi|2...   171   6e-41
ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. l...   171   7e-41
ref|NP_001078414.1| pentatricopeptide repeat-containing protein ...   168   5e-40

>ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  172 bits (436), Expect = 3e-41
 Identities = 78/161 (48%), Positives = 116/161 (72%), Gaps = 5/161 (3%)
 Frame = -1

Query: 508 SHAGLLHQGEMWFERMSCDYGLKPKIQHYGCMVDLLGKAGKLKEAYELIQKMPIGPDAAI 329
           SH G++ +G  +F+RM  +YG+ PKI+HYGCMVDLLG+AG +K+A+E IQ MP+ P+A +
Sbjct: 353 SHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVV 412

Query: 328 WRSMVGACLHHGNFDLASLAASELVLFDPDDSGDVVILSNVYSKLRRWDDVER-----LR 164
           WR+++GAC  HG+  L  +A ++L+  +P  SGD V+LSN+Y+  +RW DV +     LR
Sbjct: 413 WRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLR 472

Query: 163 KGTRKSPGHSFIEVDNDVHEFFMRDNFHPQIEEICLLVNKI 41
           +G +K+PGHS +E+ N +HEF M D  HPQ EEI + + +I
Sbjct: 473 EGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEI 513


>emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  172 bits (436), Expect = 3e-41
 Identities = 78/161 (48%), Positives = 116/161 (72%), Gaps = 5/161 (3%)
 Frame = -1

Query: 508 SHAGLLHQGEMWFERMSCDYGLKPKIQHYGCMVDLLGKAGKLKEAYELIQKMPIGPDAAI 329
           SH G++ +G  +F+RM  +YG+ PKI+HYGCMVDLLG+AG +K+A+E IQ MP+ P+A +
Sbjct: 208 SHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVV 267

Query: 328 WRSMVGACLHHGNFDLASLAASELVLFDPDDSGDVVILSNVYSKLRRWDDVER-----LR 164
           WR+++GAC  HG+  L  +A ++L+  +P  SGD V+LSN+Y+  +RW DV +     LR
Sbjct: 268 WRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLR 327

Query: 163 KGTRKSPGHSFIEVDNDVHEFFMRDNFHPQIEEICLLVNKI 41
           +G +K+PGHS +E+ N +HEF M D  HPQ EEI + + +I
Sbjct: 328 EGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEI 368


>ref|XP_002331638.1| predicted protein [Populus trichocarpa] gi|222874034|gb|EEF11165.1|
           predicted protein [Populus trichocarpa]
          Length = 480

 Score =  171 bits (433), Expect = 6e-41
 Identities = 79/162 (48%), Positives = 114/162 (70%), Gaps = 5/162 (3%)
 Frame = -1

Query: 508 SHAGLLHQGEMWFERMSCDYGLKPKIQHYGCMVDLLGKAGKLKEAYELIQKMPIGPDAAI 329
           SH G++++G  +F+RM   Y + P+I+HYGCMVDLLG+AG LKEAY+ IQ MP+ P+A I
Sbjct: 220 SHCGIVNEGFEYFKRMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVI 279

Query: 328 WRSMVGACLHHGNFDLASLAASELVLFDPDDSGDVVILSNVYSKLRRWDDVERLRK---- 161
           WR+++GAC  HG+  L + A + L+  +P DSGD V+LSN+Y+  +RW DV  +R+    
Sbjct: 280 WRTLLGACTIHGHLGLGAFARARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLS 339

Query: 160 -GTRKSPGHSFIEVDNDVHEFFMRDNFHPQIEEICLLVNKIA 38
            G RK+PG+S +E+ N VHEF M D  HPQ E I  ++ ++A
Sbjct: 340 EGVRKTPGYSLVELGNHVHEFVMGDRTHPQSEAIYKMLVEMA 381


>ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
           gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 595

 Score =  171 bits (432), Expect = 7e-41
 Identities = 78/154 (50%), Positives = 112/154 (72%), Gaps = 5/154 (3%)
 Frame = -1

Query: 508 SHAGLLHQGEMWFERMSCDYGLKPKIQHYGCMVDLLGKAGKLKEAYELIQKMPIGPDAAI 329
           SH G++ +G  +F RMS +Y ++P+I+H+GCMVDLL +AG++K+AYE I KMP+ P+  I
Sbjct: 335 SHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVI 394

Query: 328 WRSMVGACLHHGNFDLASLAASELVLFDPDDSGDVVILSNVYSKLRRWDDVERLRK---- 161
           WR+++GAC  HG+ DLA LA  +++  +P+ SGD V+LSN+Y+  +RW DV+++RK    
Sbjct: 395 WRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLR 454

Query: 160 -GTRKSPGHSFIEVDNDVHEFFMRDNFHPQIEEI 62
            G RK PGHS +EV N VHEF M D  HPQ + I
Sbjct: 455 DGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMI 488


>ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g21065 gi|332658994|gb|AEE84394.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  168 bits (425), Expect = 5e-40
 Identities = 75/164 (45%), Positives = 115/164 (70%), Gaps = 5/164 (3%)
 Frame = -1

Query: 508 SHAGLLHQGEMWFERMSCDYGLKPKIQHYGCMVDLLGKAGKLKEAYELIQKMPIGPDAAI 329
           SH G++ +G  +F RM  +Y ++P+I+H+GCMVDLL +AG++K+AYE I+ MP+ P+  I
Sbjct: 335 SHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVI 394

Query: 328 WRSMVGACLHHGNFDLASLAASELVLFDPDDSGDVVILSNVYSKLRRWDDVERLRK---- 161
           WR+++GAC  HG+ DLA  A  +++  +P+ SGD V+LSN+Y+  +RW DV+++RK    
Sbjct: 395 WRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLR 454

Query: 160 -GTRKSPGHSFIEVDNDVHEFFMRDNFHPQIEEICLLVNKIAGQ 32
            G +K PGHS +EV N VHEF M D  HPQ + I   + ++ G+
Sbjct: 455 DGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGR 498