BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035886
         (322 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002526170.1| pentatricopeptide repeat-containing protein,...    76   3e-12
ref|XP_003517841.1| PREDICTED: putative pentatricopeptide repeat...    75   6e-12
ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat...    74   1e-11
ref|XP_003517833.1| PREDICTED: putative pentatricopeptide repeat...    74   1e-11
ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat...    72   5e-11

>ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534547|gb|EEF36246.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 504

 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 36/98 (36%), Positives = 62/98 (63%)
 Frame = +2

Query: 8   VLPDTLTYNTMIYRLCKKSLLNDAQRLVIDIEEKGIAPNDVTFNFLVQGYLTEKCFRIAV 187
           ++P+ +TYN MI  LCK+  L +A+RL + +EE G   ++++FNF+++G+L E   + A+
Sbjct: 390 LVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKAM 449

Query: 188 QYLNAVVEKGFRVSAEATSMIVNLLVADEPNDESTDIF 301
           ++L  + EK F  +   T M+VNL  AD  + E  + F
Sbjct: 450 EFLKRMREKNFSPNDSVTLMLVNLYAADAQSSELPNNF 487



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 29/100 (29%), Positives = 54/100 (54%)
 Frame = +2

Query: 8   VLPDTLTYNTMIYRLCKKSLLNDAQRLVIDIEEKGIAPNDVTFNFLVQGYLTEKCFRIAV 187
           +LPD +T+ T+I  L KK  + +A ++   + ++G APN VT+N L+ G         AV
Sbjct: 180 ILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAV 239

Query: 188 QYLNAVVEKGFRVSAEATSMIVNLLVADEPNDESTDIFRK 307
           +    +VE+G ++   + + ++N        +E+  +FRK
Sbjct: 240 RLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRK 279


>ref|XP_003517841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 600

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 39/104 (37%), Positives = 59/104 (56%)
 Frame = +2

Query: 2   KEVLPDTLTYNTMIYRLCKKSLLNDAQRLVIDIEEKGIAPNDVTFNFLVQGYLTEKCFRI 181
           K V  D +TYN MI  LCK+ LL+DA+ L++ +EE G  PN+ T+N  VQG L       
Sbjct: 497 KGVKIDVVTYNIMIKGLCKEGLLDDAEDLLMKMEENGCPPNECTYNVFVQGLLRRYQISK 556

Query: 182 AVQYLNAVVEKGFRVSAEATSMIVNLLVADEPNDESTDIFRKFL 313
           + +YL  + +KGF+  A  T  ++N   A++ N       +KF+
Sbjct: 557 STKYLMFMKDKGFQADATTTKFLINYFSANKENRALEVFLQKFV 600


>ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 543

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 39/104 (37%), Positives = 60/104 (57%)
 Frame = +2

Query: 2   KEVLPDTLTYNTMIYRLCKKSLLNDAQRLVIDIEEKGIAPNDVTFNFLVQGYLTEKCFRI 181
           K V  D +TYN MI  LCK+ LL+DA+ L++ +EE G  P++ T+N  VQG L       
Sbjct: 440 KGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGLLRRYEISK 499

Query: 182 AVQYLNAVVEKGFRVSAEATSMIVNLLVADEPNDESTDIFRKFL 313
           + +YL  +  KGFR +A  T +++N   A++ N       +KF+
Sbjct: 500 STKYLMFMKGKGFRANATTTKLLINYFSANKENRAFQVFLQKFV 543


>ref|XP_003517833.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 595

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 39/104 (37%), Positives = 60/104 (57%)
 Frame = +2

Query: 2   KEVLPDTLTYNTMIYRLCKKSLLNDAQRLVIDIEEKGIAPNDVTFNFLVQGYLTEKCFRI 181
           K V  D +TYN MI  LCK+ LL+DA+ L++ +EE G  P++ T+N  VQG L       
Sbjct: 492 KGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGLLRRYEISK 551

Query: 182 AVQYLNAVVEKGFRVSAEATSMIVNLLVADEPNDESTDIFRKFL 313
           + +YL  +  KGFR +A  T +++N   A++ N       +KF+
Sbjct: 552 STKYLMFMKGKGFRANATTTKLLINYFSANKENRAFQVFLQKFV 595


>ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
 Frame = +2

Query: 29  YNTMIYRLCKKSLLNDAQRLVIDIEEKGIAPNDVTFNFLVQGYLTEKCFRIAVQYLNAVV 208
           Y  MI  LCK+  L+ A+ L+I++EE G  PN+ T+N  VQG LT+K    +++YL  + 
Sbjct: 500 YTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGLLTKKEIARSIKYLTIMR 559

Query: 209 EKGFRVSAEATSMIVNLLVADEPNDESTD-IFRK 307
           +KGF V A  T  I+N L  +E + +  + +FRK
Sbjct: 560 DKGFSVDAATTEFIINYLSTNEGDTKIREFLFRK 593