BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035857
         (591 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309680.1| predicted protein [Populus trichocarpa] gi|2...   213   3e-53
ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containi...   212   4e-53
ref|XP_002515415.1| pentatricopeptide repeat-containing protein,...   209   3e-52
emb|CAN70487.1| hypothetical protein VITISV_008663 [Vitis vinifera]   176   3e-42
ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containi...   169   4e-40

>ref|XP_002309680.1| predicted protein [Populus trichocarpa] gi|222855656|gb|EEE93203.1|
           predicted protein [Populus trichocarpa]
          Length = 500

 Score =  213 bits (541), Expect = 3e-53
 Identities = 103/193 (53%), Positives = 144/193 (74%)
 Frame = -2

Query: 581 KVFKDMTRKDLIAWNSMLDAYASAGQMDNAANLFSLMPSKDHISFNTMISGFANIGNVEA 402
           KVF+ M  KD++AWNS+LDAYAS  QMD+A  +F+ MP KD  SFN MISG+++IG   +
Sbjct: 106 KVFEKMPVKDVVAWNSILDAYASTDQMDDALKVFNSMPLKDLSSFNIMISGYSSIGKTLS 165

Query: 401 ARQIFDQLTDGDVVSWNSMVLAYTKVGDMERACALFDQMPERNVVSWNTMLCGYLQSGCY 222
           AR IFD + + D+VSWNSM+ AY +  DMERAC LF +MP +N+++WNTM+ G+LQ+  Y
Sbjct: 166 ARSIFDNMAEKDIVSWNSMISAYIQGEDMERACDLFREMPAKNIITWNTMVKGFLQNQLY 225

Query: 221 SSVVGLFNDLRGMDELEPNHVTLTTVLSACARMGALDTGTGIHILAIDIGLMLDPKVMVS 42
           + V+ LF++++  + L P+++T+T VLSACA  G+L  GT +HI AID GL   P V  +
Sbjct: 226 AEVLDLFDEMKTTNCL-PDYLTVTGVLSACAHSGSLKKGTEVHIYAIDNGLASSPHVTTA 284

Query: 41  VIDMYAKCGSIER 3
           +IDMYAKCGSI++
Sbjct: 285 LIDMYAKCGSIQQ 297


>ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 517

 Score =  212 bits (539), Expect = 4e-53
 Identities = 107/193 (55%), Positives = 137/193 (70%)
 Frame = -2

Query: 581 KVFKDMTRKDLIAWNSMLDAYASAGQMDNAANLFSLMPSKDHISFNTMISGFANIGNVEA 402
           KVF++M  KD++ WNSML AYAS GQMDNA  LF  MP KD  SFN MISG+A IG   A
Sbjct: 110 KVFEEMGVKDVVVWNSMLAAYASCGQMDNAMKLFDNMPLKDLASFNIMISGYAKIGKKAA 169

Query: 401 ARQIFDQLTDGDVVSWNSMVLAYTKVGDMERACALFDQMPERNVVSWNTMLCGYLQSGCY 222
           AR IFD++   D+VSWNSM+LA T VGDM  A  LFD MP++NV++WNTM+ GYL +  Y
Sbjct: 170 ARSIFDRIHAKDIVSWNSMILACTNVGDMGNARNLFDVMPKKNVITWNTMISGYLHAQLY 229

Query: 221 SSVVGLFNDLRGMDELEPNHVTLTTVLSACARMGALDTGTGIHILAIDIGLMLDPKVMVS 42
           +  V LF++++  +  E +H+T+T VLSACA +G L  GT +H+ A D  L   P V  S
Sbjct: 230 AEAVDLFDEMKAGNH-EADHLTVTLVLSACAHLGWLGKGTEMHVYAQDHRLASSPHVATS 288

Query: 41  VIDMYAKCGSIER 3
           +IDMYAKCG+I+R
Sbjct: 289 LIDMYAKCGTIQR 301


>ref|XP_002515415.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545359|gb|EEF46864.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 507

 Score =  209 bits (532), Expect = 3e-52
 Identities = 106/194 (54%), Positives = 138/194 (71%)
 Frame = -2

Query: 584 FKVFKDMTRKDLIAWNSMLDAYASAGQMDNAANLFSLMPSKDHISFNTMISGFANIGNVE 405
           FKVF+ M  KDLIAWNSMLDAYAS  QMD A+NLF+ MP KD  SFN MISG++  G   
Sbjct: 105 FKVFEIMPVKDLIAWNSMLDAYASNAQMDYASNLFNSMPLKDISSFNIMISGYSTRGEAM 164

Query: 404 AARQIFDQLTDGDVVSWNSMVLAYTKVGDMERACALFDQMPERNVVSWNTMLCGYLQSGC 225
            AR IFD +   D VSWNSM+ AY + GDME+  ALF +MP +N V+WNTM+ G LQS  
Sbjct: 165 LARSIFDSMEVRDFVSWNSMISAYIRAGDMEKGLALFREMPVKNTVTWNTMITGCLQSEH 224

Query: 224 YSSVVGLFNDLRGMDELEPNHVTLTTVLSACARMGALDTGTGIHILAIDIGLMLDPKVMV 45
           +  V+ LF +++  + + P+++T+T+VLS C  +G+L TG  IHI AID GL+  P V  
Sbjct: 225 FGMVLDLFEEMKTANYI-PDYLTVTSVLSTCGHLGSLGTGIKIHIYAIDNGLVSSPHVTT 283

Query: 44  SVIDMYAKCGSIER 3
           ++IDMY+KCGSIE+
Sbjct: 284 ALIDMYSKCGSIEQ 297


>emb|CAN70487.1| hypothetical protein VITISV_008663 [Vitis vinifera]
          Length = 1302

 Score =  176 bits (445), Expect = 3e-42
 Identities = 97/193 (50%), Positives = 122/193 (63%)
 Frame = -2

Query: 581  KVFKDMTRKDLIAWNSMLDAYASAGQMDNAANLFSLMPSKDHISFNTMISGFANIGNVEA 402
            KVF++M  KD++ WNSML AYAS GQMDNA  LF  MP KD  SFN MISG+A IG   A
Sbjct: 914  KVFEEMGVKDVVVWNSMLAAYASXGQMDNAMKLFDNMPLKDLASFNIMISGYAKIGRKAA 973

Query: 401  ARQIFDQLTDGDVVSWNSMVLAYTKVGDMERACALFDQMPERNVVSWNTMLCGYLQSGCY 222
            AR IFD++   D+VSWNSM+LA T VGDM  A  LFD MP++N V               
Sbjct: 974  ARSIFDRIHAKDIVSWNSMILACTNVGDMGNARNLFDVMPKKNAVD-------------- 1019

Query: 221  SSVVGLFNDLRGMDELEPNHVTLTTVLSACARMGALDTGTGIHILAIDIGLMLDPKVMVS 42
                 LF++++  +  E +H+T+  VLSACA +G L  GT +H+ A D  L   P V  S
Sbjct: 1020 -----LFDEMKAGNH-EADHLTVALVLSACAHLGWLGKGTEMHVYAQDHRLASSPHVATS 1073

Query: 41   VIDMYAKCGSIER 3
            +IDMYAKCG+I+R
Sbjct: 1074 LIDMYAKCGTIQR 1086


>ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  169 bits (427), Expect = 4e-40
 Identities = 82/193 (42%), Positives = 121/193 (62%)
 Frame = -2

Query: 584 FKVFKDMTRKDLIAWNSMLDAYASAGQMDNAANLFSLMPSKDHISFNTMISGFANIGNVE 405
           +K+F  M  ++++AW SM+  Y    ++  A  LF L P +D + +N M+SG+  IG+++
Sbjct: 178 YKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMK 237

Query: 404 AARQIFDQLTDGDVVSWNSMVLAYTKVGDMERACALFDQMPERNVVSWNTMLCGYLQSGC 225
           AAR++FD +   D +SWN+M+  Y   GD+E    LF++MPERNV SWN ++ GY  +GC
Sbjct: 238 AARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGC 297

Query: 224 YSSVVGLFNDLRGMDELEPNHVTLTTVLSACARMGALDTGTGIHILAIDIGLMLDPKVMV 45
           +  V+  F  +     + PN  TL TVLSACAR+GALD G  +H+ A  IG      V  
Sbjct: 298 FFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGN 357

Query: 44  SVIDMYAKCGSIE 6
           ++IDMY+KCG IE
Sbjct: 358 ALIDMYSKCGLIE 370



 Score = 89.4 bits (220), Expect = 4e-16
 Identities = 58/234 (24%), Positives = 111/234 (47%), Gaps = 41/234 (17%)
 Frame = -2

Query: 581 KVFKDMTRKDLIAWNSMLDAYASAGQMDNAANLFSLMPSKDHISFNTMISGFANIGNV-E 405
           K+F  M  +D ++WN+ML+ YA+ G ++    LF  MP ++  S+N +I G+A+ G   E
Sbjct: 241 KLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFE 300

Query: 404 AARQIFDQLTDGDVV----------------------SW-----------------NSMV 342
             R     L DG VV                       W                 N+++
Sbjct: 301 VLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALI 360

Query: 341 LAYTKVGDMERACALFDQMPERNVVSWNTMLCGYLQSGCYSSVVGLFNDLRGMDELEPNH 162
             Y+K G +E A  +F+ M  +++++WN+M+CG    GC +  + LF+ ++   E +P+ 
Sbjct: 361 DMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGE-KPDG 419

Query: 161 VTLTTVLSACARMGALDTGTG-IHILAIDIGLMLDPKVMVSVIDMYAKCGSIER 3
           +T   VL +C  +G ++ GT   + +  +  +    +    ++D++ + G ++R
Sbjct: 420 ITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDR 473



 Score = 65.5 bits (158), Expect = 7e-09
 Identities = 38/109 (34%), Positives = 57/109 (52%)
 Frame = -2

Query: 350 SMVLAYTKVGDMERACALFDQMPERNVVSWNTMLCGYLQSGCYSSVVGLFNDLRGMDELE 171
           ++V ++  +  M  A  LFD  P+  V  WN +  GY  +  Y  VV LF  ++ MD + 
Sbjct: 62  NVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMD-VR 120

Query: 170 PNHVTLTTVLSACARMGALDTGTGIHILAIDIGLMLDPKVMVSVIDMYA 24
           PN  T   VL +CA++GA   G  IH   I  GL  +  V  ++ID+Y+
Sbjct: 121 PNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYS 169