BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035834
         (416 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515739.1| pentatricopeptide repeat-containing protein,...   122   2e-26
ref|XP_002534209.1| pentatricopeptide repeat-containing protein,...   117   1e-24
ref|XP_002335015.1| predicted protein [Populus trichocarpa] gi|2...   115   5e-24
ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containi...   113   2e-23
emb|CBI32762.3| unnamed protein product [Vitis vinifera]              113   2e-23

>ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545176|gb|EEF46686.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 613

 Score =  122 bits (307), Expect = 2e-26
 Identities = 63/141 (44%), Positives = 97/141 (68%), Gaps = 3/141 (2%)
 Frame = -2

Query: 415 FVLAKDLLKYIAVSD---CPFSNLASLVKKCSENEWVLSKLFDMLFRVYSDLKMFDKCFE 245
           FV+ K++L   A+     C  S+  SL+         + KL DMLFRVY D  MF++ F+
Sbjct: 107 FVVMKNVLTCYAMDKNLRCSVSDFVSLIDNRFHEPKFVEKLCDMLFRVYVDNSMFEEGFK 166

Query: 244 VFECMKSNGIEIEERSCFVCLLALKKSCQVELLLEFFEKMVEANVGLSVYSMSVVVDLVC 65
           VF+ M  NG++I++RSC VCLLALK+S Q+ + L FF+KMVE  V ++VYSM++V+D +C
Sbjct: 167 VFDYMVHNGLKIDDRSCIVCLLALKRSDQMVMSLGFFKKMVEFKVDVTVYSMTIVIDGLC 226

Query: 64  KRGDIKRGLELIQEVSGRGIR 2
           K+G ++R  +L+ E++G+GI+
Sbjct: 227 KKGRVERAKDLMLEMTGKGIK 247


>ref|XP_002534209.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223525704|gb|EEF28173.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 491

 Score =  117 bits (292), Expect = 1e-24
 Identities = 62/139 (44%), Positives = 98/139 (70%), Gaps = 4/139 (2%)
 Frame = -2

Query: 406 AKDLLKYIAVSDC---PFSNLASLVKKCSENE-WVLSKLFDMLFRVYSDLKMFDKCFEVF 239
           A++LLK +++ D    PF  LAS ++ C   E  V++KLF+++ +VYSD K F +  E F
Sbjct: 102 AENLLKSVSIEDYHRYPFPLLASTIEHCCCLEPKVIAKLFNLMLKVYSDNKKFGQVIETF 161

Query: 238 ECMKSNGIEIEERSCFVCLLALKKSCQVELLLEFFEKMVEANVGLSVYSMSVVVDLVCKR 59
           + MK+NGIEI+ER+C + LLALK+  Q+   LEFF  M+++ V +SVYS+++VVD++C+ 
Sbjct: 162 DHMKNNGIEIDERTCTMHLLALKRKNQIRSSLEFFNLMIKSGVEVSVYSLTIVVDVLCET 221

Query: 58  GDIKRGLELIQEVSGRGIR 2
           G+IKR  EL+Q++   G +
Sbjct: 222 GEIKRCRELVQKMVTSGTK 240


>ref|XP_002335015.1| predicted protein [Populus trichocarpa] gi|222832609|gb|EEE71086.1|
           predicted protein [Populus trichocarpa]
          Length = 302

 Score =  115 bits (287), Expect = 5e-24
 Identities = 61/143 (42%), Positives = 97/143 (67%), Gaps = 5/143 (3%)
 Frame = -2

Query: 415 FVLAKDLLKYIAVSD---CPFSNLASLVKKCSENEW--VLSKLFDMLFRVYSDLKMFDKC 251
           F   K +L Y+A+     CP +NL SLV++   N     + KL DMLFRVY+D  +F++ 
Sbjct: 109 FAEMKRVLTYVAMDSNLRCPVANLVSLVEESGFNNEPNFVEKLCDMLFRVYADCNLFEEG 168

Query: 250 FEVFECMKSNGIEIEERSCFVCLLALKKSCQVELLLEFFEKMVEANVGLSVYSMSVVVDL 71
           F VF+ M S  ++I++RSC V LLALK+  ++E  L  F++MVE NV ++VYS+++V+D 
Sbjct: 169 FRVFDYMVSYELKIDDRSCIVFLLALKRCDKMEACLGLFKRMVEFNVEVTVYSLTIVIDG 228

Query: 70  VCKRGDIKRGLELIQEVSGRGIR 2
           +CKR  +KR ++L+ E++ +GI+
Sbjct: 229 LCKRRRVKRAIDLMIEMASKGIK 251


>ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  113 bits (282), Expect = 2e-23
 Identities = 62/147 (42%), Positives = 93/147 (63%), Gaps = 9/147 (6%)
 Frame = -2

Query: 415 FVLAKDLLKYIAVSD---CPFSNLASLV------KKCSENEWVLSKLFDMLFRVYSDLKM 263
           F   + L    AV D    P + +ASLV       KC+  ++   K FD+LFRVY+D KM
Sbjct: 112 FAEIRHLFNCAAVDDGLRVPVTVIASLVDDACNESKCNRAKFK-EKFFDLLFRVYADNKM 170

Query: 262 FDKCFEVFECMKSNGIEIEERSCFVCLLALKKSCQVELLLEFFEKMVEANVGLSVYSMSV 83
           F +  E FE M+  G  I+ERSC V LLAL++  QV+  L FF +MV  +V ++VYS+++
Sbjct: 171 FGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTI 230

Query: 82  VVDLVCKRGDIKRGLELIQEVSGRGIR 2
           V+D +CKRGD++ G +L+ EV+ +G++
Sbjct: 231 VLDGLCKRGDVEMGRKLMDEVAAKGVK 257


>emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  113 bits (282), Expect = 2e-23
 Identities = 62/147 (42%), Positives = 93/147 (63%), Gaps = 9/147 (6%)
 Frame = -2

Query: 415 FVLAKDLLKYIAVSD---CPFSNLASLV------KKCSENEWVLSKLFDMLFRVYSDLKM 263
           F   + L    AV D    P + +ASLV       KC+  ++   K FD+LFRVY+D KM
Sbjct: 116 FAEIRHLFNCAAVDDGLRVPVTVIASLVDDACNESKCNRAKFK-EKFFDLLFRVYADNKM 174

Query: 262 FDKCFEVFECMKSNGIEIEERSCFVCLLALKKSCQVELLLEFFEKMVEANVGLSVYSMSV 83
           F +  E FE M+  G  I+ERSC V LLAL++  QV+  L FF +MV  +V ++VYS+++
Sbjct: 175 FGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTI 234

Query: 82  VVDLVCKRGDIKRGLELIQEVSGRGIR 2
           V+D +CKRGD++ G +L+ EV+ +G++
Sbjct: 235 VLDGLCKRGDVEMGRKLMDEVAAKGVK 261