BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035826
         (424 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274817.1| PREDICTED: uncharacterized protein LOC100257...    98   8e-19
ref|XP_002276324.1| PREDICTED: uncharacterized protein LOC100256...    97   1e-18
emb|CAN77553.1| hypothetical protein VITISV_017397 [Vitis vinifera]    97   1e-18
gb|AAF80646.1|AC012190_2 Contains similarity to F28O16.19 a puta...    96   2e-18
ref|NP_173539.1| Mitochondrial transcription termination factor ...    96   2e-18

>ref|XP_002274817.1| PREDICTED: uncharacterized protein LOC100257952 [Vitis vinifera]
          Length = 389

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 50/126 (39%), Positives = 80/126 (63%), Gaps = 1/126 (0%)
 Frame = -1

Query: 421 KSCTLTYLINSCGLSREKAITVSKRLKTFGTNKSNAILKLLKDHGFSNTQIT*TVFSWPN 242
           +S T++YLI+SCGLS + A++ SK L+     K +++L     HGFS +Q +  V S P 
Sbjct: 53  ESFTVSYLIDSCGLSHKDALSASKLLRFETPEKPDSVLAFFNSHGFSKSQTSKIVKSLPR 112

Query: 241 VLSASPE-TVKPKIQFFY*MSISVPEVTQLLATQPHVLRHGLGKQIIPSLQSLKTFIQND 65
           +L++ P+ T+ PK+QFFY    S P+V +++ + P +L+  L  QIIPS   LK F+Q+D
Sbjct: 113 LLASDPDKTLLPKLQFFYSKGASKPDVAKIVVSTPGILKRSLENQIIPSFNFLKDFLQSD 172

Query: 64  DIITAV 47
           ++   V
Sbjct: 173 EMAITV 178


>ref|XP_002276324.1| PREDICTED: uncharacterized protein LOC100256384 [Vitis vinifera]
          Length = 396

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 52/137 (37%), Positives = 82/137 (59%), Gaps = 2/137 (1%)
 Frame = -1

Query: 412 TLTYLINSCGLSREKAITVSKRLKTFGTNKSNAILKLLKDHGFSNTQIT*TVFSWPNVLS 233
           T++YL+NSCGLS + A++ SK +      K N++L     HGFS TQ +  V + P +L 
Sbjct: 56  TVSYLVNSCGLSHKDALSASKYIHFEAPEKPNSVLAFFNSHGFSKTQTSKIVKTEPQLLL 115

Query: 232 ASPE-TVKPKIQFFY*MSISVPEVTQLLATQPHVLRHGLGKQIIPSLQSLKTFIQNDDI- 59
           + P+ T+ PK+QFFY    S P+V +++A+ P ++R  L  Q+IPS    K F+Q+D + 
Sbjct: 116 SDPDKTLLPKLQFFYSKGASKPDVAKIVASSPAIMRRSLENQVIPSYNFFKDFLQSDKMA 175

Query: 58  ITAVANDRHEYLYRINS 8
           IT V       L+ I++
Sbjct: 176 ITVVKRFSRILLFDIHT 192


>emb|CAN77553.1| hypothetical protein VITISV_017397 [Vitis vinifera]
          Length = 719

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 52/137 (37%), Positives = 82/137 (59%), Gaps = 2/137 (1%)
 Frame = -1

Query: 412 TLTYLINSCGLSREKAITVSKRLKTFGTNKSNAILKLLKDHGFSNTQIT*TVFSWPNVLS 233
           T++YL+NSCGLS + A++ SK +      K N++L     HGFS TQ +  V + P +L 
Sbjct: 53  TVSYLVNSCGLSHKDALSASKYIHFEAPEKPNSVLAFFNSHGFSKTQTSKIVKTEPQLLL 112

Query: 232 ASPE-TVKPKIQFFY*MSISVPEVTQLLATQPHVLRHGLGKQIIPSLQSLKTFIQNDDI- 59
           + P+ T+ PK+QFFY    S P+V +++A+ P ++R  L  Q+IPS    K F+Q+D + 
Sbjct: 113 SDPDKTLLPKLQFFYSKGTSKPDVAKIVASSPAIMRRSLENQVIPSYNFFKDFLQSDKMA 172

Query: 58  ITAVANDRHEYLYRINS 8
           IT V       L+ I++
Sbjct: 173 ITVVKRFSRILLFDIHT 189


>gb|AAF80646.1|AC012190_2 Contains similarity to F28O16.19 a putative translation initiation
            factor IF-2 gi|6143896 from Arabidopsis thaliana
            gb|AC010718. It is a member of Elongation factor Tu
            family. ESTs gb|AI994592 and gb|T20793 come from thias
            gene [Arabidopsis thaliana]
          Length = 1552

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 47/123 (38%), Positives = 80/123 (65%), Gaps = 1/123 (0%)
 Frame = -1

Query: 421  KSCTLTYLINSCGLSREKAITVSKRLKTFGTNKSNAILKLLKDHGFSNTQIT*TVFSWPN 242
            +S T++YL++SCGLS E A + S+ +K   + K +++L L KDHGF+N QIT  + S+P 
Sbjct: 1217 ESFTVSYLVDSCGLSLESAKSNSRFVKLVSSKKPDSVLALFKDHGFTNDQITSVIKSFPR 1276

Query: 241  VLSASPE-TVKPKIQFFY*MSISVPEVTQLLATQPHVLRHGLGKQIIPSLQSLKTFIQND 65
            VLS SPE  + PK+ FF  +  S  +  +++++ P +L + L K++IP   SLK+ +  +
Sbjct: 1277 VLSLSPEDVISPKLMFFSSIGFSTSDTAKMISSSPKMLSYSLHKRLIPCYDSLKSILVEE 1336

Query: 64   DII 56
            + +
Sbjct: 1337 ESV 1339


>ref|NP_173539.1| Mitochondrial transcription termination factor family protein
           [Arabidopsis thaliana] gi|332191949|gb|AEE30070.1|
           Mitochondrial transcription termination factor family
           protein [Arabidopsis thaliana]
          Length = 390

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 47/123 (38%), Positives = 80/123 (65%), Gaps = 1/123 (0%)
 Frame = -1

Query: 421 KSCTLTYLINSCGLSREKAITVSKRLKTFGTNKSNAILKLLKDHGFSNTQIT*TVFSWPN 242
           +S T++YL++SCGLS E A + S+ +K   + K +++L L KDHGF+N QIT  + S+P 
Sbjct: 55  ESFTVSYLVDSCGLSLESAKSNSRFVKLVSSKKPDSVLALFKDHGFTNDQITSVIKSFPR 114

Query: 241 VLSASPE-TVKPKIQFFY*MSISVPEVTQLLATQPHVLRHGLGKQIIPSLQSLKTFIQND 65
           VLS SPE  + PK+ FF  +  S  +  +++++ P +L + L K++IP   SLK+ +  +
Sbjct: 115 VLSLSPEDVISPKLMFFSSIGFSTSDTAKMISSSPKMLSYSLHKRLIPCYDSLKSILVEE 174

Query: 64  DII 56
           + +
Sbjct: 175 ESV 177