BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035771
         (294 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa Japonica Group] gi...    91   1e-16
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta...    87   2e-15
gb|AAO65863.1| putative reverse transcriptase [Oryza sativa Japo...    84   9e-15
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    84   9e-15
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]                84   1e-14

>emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa Japonica Group]
           gi|38346911|emb|CAE03883.2| OSJNBb0015N08.11 [Oryza
           sativa Japonica Group]
          Length = 1026

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 39/95 (41%), Positives = 60/95 (63%)
 Frame = -1

Query: 288 EIWTAVNDMKATSSPGPDGYNGHFYVHCWDLIRYDVCNAVKSFFREGIIPNGGNASFITL 109
           E+   V D+K   SPGPDG  G FY+H WDLI++D+ + +  F R  +  +  N   ITL
Sbjct: 243 ELRNVVFDLKKNKSPGPDGMPGEFYIHFWDLIKHDLLDLINDFQRNSVNIDRLNFGVITL 302

Query: 108 VPKDRSASKLSQYKPICMSNFLIKIFSKIIQQRLN 4
           +PK + AS++ +++PIC+ N   KI +K++  RLN
Sbjct: 303 IPKTKDASQIQKFRPICLLNVSFKIITKVLMNRLN 337


>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1449

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 41/94 (43%), Positives = 54/94 (57%)
 Frame = -1

Query: 288  EIWTAVNDMKATSSPGPDGYNGHFYVHCWDLIRYDVCNAVKSFFREGIIPNGGNASFITL 109
            EI  A+  M    SPGPDGY   FY   WD+I  +   AVKSFF +G +P G N + + L
Sbjct: 872  EIRGALFSMPNDKSPGPDGYTSEFYKRAWDIIGAEFVLAVKSFFEKGFLPKGVNTTILAL 931

Query: 108  VPKDRSASKLSQYKPICMSNFLIKIFSKIIQQRL 7
            +PK   A ++  Y+PI   N + K+ SKII  RL
Sbjct: 932  IPKKLEAKEMKDYRPISCCNVIYKVISKIIANRL 965


>gb|AAO65863.1| putative reverse transcriptase [Oryza sativa Japonica Group]
           gi|108711801|gb|ABF99596.1| retrotransposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
          Length = 793

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 37/95 (38%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
 Frame = -1

Query: 288 EIWTAVNDMKATSSPGPDGYNGHFYVHCWDLIRYDVCNAVKSFFR-EGIIPNGGNASFIT 112
           E+W A+ D    ++PGPDG++G FY  CWD+I+ D+  A+    R +G      N +FIT
Sbjct: 327 EVWKAIADSPRDNAPGPDGFSGQFYYCCWDIIKEDIMAALNQLHRMDGSSLGKVNKAFIT 386

Query: 111 LVPKDRSASKLSQYKPICMSNFLIKIFSKIIQQRL 7
           L+PK   A KL  ++PI + +  +K+F+K++ +RL
Sbjct: 387 LLPKRSDARKLKDFRPISLVHSFVKLFTKVLSRRL 421


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 39/94 (41%), Positives = 55/94 (58%)
 Frame = -1

Query: 288 EIWTAVNDMKATSSPGPDGYNGHFYVHCWDLIRYDVCNAVKSFFREGIIPNGGNASFITL 109
           EI   V  M    SPGPDGY   FY   W++I  +   A++SFF +G +P G N++ + L
Sbjct: 345 EIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILAL 404

Query: 108 VPKDRSASKLSQYKPICMSNFLIKIFSKIIQQRL 7
           +PK + A ++  Y+PI   N L K+ SKII  RL
Sbjct: 405 IPKKKEAKEMKDYRPISCCNVLYKVISKIIANRL 438


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 40/94 (42%), Positives = 55/94 (58%)
 Frame = -1

Query: 288 EIWTAVNDMKATSSPGPDGYNGHFYVHCWDLIRYDVCNAVKSFFREGIIPNGGNASFITL 109
           EI T +  M    SPGPDGY   FY   WD+I  +    V+SFF++G +P G N+  + L
Sbjct: 104 EIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTLPVQSFFQKGFLPKGINSIILAL 163

Query: 108 VPKDRSASKLSQYKPICMSNFLIKIFSKIIQQRL 7
           +PK  +A ++  Y+PI   N L K+ SKII  RL
Sbjct: 164 IPKKLAAKEMRDYRPISCCNVLYKVISKIIANRL 197