BLASTX nr result
ID: Coptis25_contig00035768
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00035768
(482 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat... 197 1e-48
emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera] 197 1e-48
ref|XP_002307160.1| predicted protein [Populus trichocarpa] gi|2... 195 3e-48
ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp.... 195 4e-48
ref|XP_002534039.1| pentatricopeptide repeat-containing protein,... 194 8e-48
>ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial [Vitis vinifera]
gi|296085293|emb|CBI29025.3| unnamed protein product
[Vitis vinifera]
Length = 854
Score = 197 bits (500), Expect = 1e-48
Identities = 96/159 (60%), Positives = 119/159 (74%)
Frame = -3
Query: 477 LGEMRGDGWDVDKFTLTPILQAYCNAGKFKEALIVFNRIFDRGWVDEHVFTILMVSFSKW 298
L EM GW+ DK+TLT +LQAYCN+ KF +AL VFN I+ RGWVD HV +IL+++FSK
Sbjct: 222 LKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVDGHVLSILVLTFSKC 281
Query: 297 GEVDKAFELVEKMEGLNMNPNEKTLCSLIHGFAKESRVDKALQLFEKMQILAFNPDLPLY 118
GEVDKAFEL+E+ME L + NEKT C LIHGF ++SRVDKALQLF+KMQ F PD+ +Y
Sbjct: 282 GEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVY 341
Query: 117 SVLIEGLCKKKELGKALQLYTQMKSTGIYPDVHVYRILI 1
LI GLC KKE+ KAL L ++MK GI PD+ + LI
Sbjct: 342 DALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLI 380
Score = 66.6 bits (161), Expect = 2e-09
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 3/162 (1%)
Frame = -3
Query: 477 LGEMRGDGWDVDKFTLTPILQAYCNAGKFKEALIVFNRIFDRG---WVDEHVFTILMVSF 307
L EM+G G+ +FT I C AL + + G W+ +T+L+
Sbjct: 515 LKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKH--YTLLVKQL 572
Query: 306 SKWGEVDKAFELVEKMEGLNMNPNEKTLCSLIHGFAKESRVDKALQLFEKMQILAFNPDL 127
K +A + +M P+ + I GF K VD+AL++F + + PD+
Sbjct: 573 CKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDV 632
Query: 126 PLYSVLIEGLCKKKELGKALQLYTQMKSTGIYPDVHVYRILI 1
Y+ LI G CK K + +A + +M + G+ P V Y +LI
Sbjct: 633 VAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLI 674
Score = 60.5 bits (145), Expect = 1e-07
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
Frame = -3
Query: 480 WLGEMRGDGWDVDKFTLTPILQAYCNAGKFKEALIVFNRIFDRGWVDEHV-FTILMVSFS 304
+L EM +G+ D + + + +AL +F I RG+ + V + L+ F
Sbjct: 584 FLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFC 643
Query: 303 KWGEVDKAFELVEKMEGLNMNPNEKTLCSLIHGFAKESRVDKALQLFEKMQILAFNPDLP 124
K V +A +++++M + P+ T LI G+ K +D+A +M P++
Sbjct: 644 KVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVI 703
Query: 123 LYSVLIEGLCKKKELGKALQLYTQMKSTGIYPD 25
Y+ LI+GLC A+ L+ +M+ G P+
Sbjct: 704 TYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPN 736
Score = 58.5 bits (140), Expect = 5e-07
Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 13/171 (7%)
Frame = -3
Query: 474 GEMRGDGWDVDKFTLTP------------ILQAYCNAGKFKEALIVFNRIFDRGWVDEHV 331
G+ D ++V+KF + ++ CN GK AL +F + G +
Sbjct: 434 GDNYTDNFEVNKFFMVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVL 493
Query: 330 -FTILMVSFSKWGEVDKAFELVEKMEGLNMNPNEKTLCSLIHGFAKESRVDKALQLFEKM 154
+ L+ S +++ + L+++M+G P + T S+ + V AL + +M
Sbjct: 494 LYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREM 553
Query: 153 QILAFNPDLPLYSVLIEGLCKKKELGKALQLYTQMKSTGIYPDVHVYRILI 1
++ P + Y++L++ LCK+K +A +M G PD+ Y I
Sbjct: 554 RVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAI 604
>emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
Length = 814
Score = 197 bits (500), Expect = 1e-48
Identities = 96/159 (60%), Positives = 119/159 (74%)
Frame = -3
Query: 477 LGEMRGDGWDVDKFTLTPILQAYCNAGKFKEALIVFNRIFDRGWVDEHVFTILMVSFSKW 298
L EM GW+ DK+TLT +LQAYCN+ KF +AL VFN I+ RGWVD HV +IL+++FSK
Sbjct: 182 LKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVDGHVLSILVLTFSKC 241
Query: 297 GEVDKAFELVEKMEGLNMNPNEKTLCSLIHGFAKESRVDKALQLFEKMQILAFNPDLPLY 118
GEVDKAFEL+E+ME L + NEKT C LIHGF ++SRVDKALQLF+KMQ F PD+ +Y
Sbjct: 242 GEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVY 301
Query: 117 SVLIEGLCKKKELGKALQLYTQMKSTGIYPDVHVYRILI 1
LI GLC KKE+ KAL L ++MK GI PD+ + LI
Sbjct: 302 DALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLI 340
Score = 66.6 bits (161), Expect = 2e-09
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 3/162 (1%)
Frame = -3
Query: 477 LGEMRGDGWDVDKFTLTPILQAYCNAGKFKEALIVFNRIFDRG---WVDEHVFTILMVSF 307
L EM+G G+ +FT I C AL + + G W+ +T+L+
Sbjct: 475 LKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKH--YTLLVKQL 532
Query: 306 SKWGEVDKAFELVEKMEGLNMNPNEKTLCSLIHGFAKESRVDKALQLFEKMQILAFNPDL 127
K +A + +M P+ + I GF K VD+AL++F + + PD+
Sbjct: 533 CKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDV 592
Query: 126 PLYSVLIEGLCKKKELGKALQLYTQMKSTGIYPDVHVYRILI 1
Y+ LI G CK K + +A + +M + G+ P V Y +LI
Sbjct: 593 VAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLI 634
Score = 60.5 bits (145), Expect = 1e-07
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
Frame = -3
Query: 480 WLGEMRGDGWDVDKFTLTPILQAYCNAGKFKEALIVFNRIFDRGWVDEHV-FTILMVSFS 304
+L EM +G+ D + + + +AL +F I RG+ + V + L+ F
Sbjct: 544 FLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFC 603
Query: 303 KWGEVDKAFELVEKMEGLNMNPNEKTLCSLIHGFAKESRVDKALQLFEKMQILAFNPDLP 124
K V +A +++++M + P+ T LI G+ K +D+A +M P++
Sbjct: 604 KVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVI 663
Query: 123 LYSVLIEGLCKKKELGKALQLYTQMKSTGIYPD 25
Y+ LI+GLC A+ L+ +M+ G P+
Sbjct: 664 TYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPN 696
Score = 58.5 bits (140), Expect = 5e-07
Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 13/171 (7%)
Frame = -3
Query: 474 GEMRGDGWDVDKFTLTP------------ILQAYCNAGKFKEALIVFNRIFDRGWVDEHV 331
G+ D ++V+KF + ++ CN GK AL +F + G +
Sbjct: 394 GDNYTDNFEVNKFFMVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVL 453
Query: 330 -FTILMVSFSKWGEVDKAFELVEKMEGLNMNPNEKTLCSLIHGFAKESRVDKALQLFEKM 154
+ L+ S +++ + L+++M+G P + T S+ + V AL + +M
Sbjct: 454 LYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREM 513
Query: 153 QILAFNPDLPLYSVLIEGLCKKKELGKALQLYTQMKSTGIYPDVHVYRILI 1
++ P + Y++L++ LCK+K +A +M G PD+ Y I
Sbjct: 514 RVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAI 564
>ref|XP_002307160.1| predicted protein [Populus trichocarpa] gi|222856609|gb|EEE94156.1|
predicted protein [Populus trichocarpa]
Length = 726
Score = 195 bits (496), Expect = 3e-48
Identities = 95/159 (59%), Positives = 118/159 (74%)
Frame = -3
Query: 477 LGEMRGDGWDVDKFTLTPILQAYCNAGKFKEALIVFNRIFDRGWVDEHVFTILMVSFSKW 298
L EM GW DK+TLTP+LQ YCN +F +AL VFN I DRGWVDE+VF+IL+++FSKW
Sbjct: 89 LKEMHDHGWGFDKYTLTPVLQVYCNMAEFDKALDVFNEIHDRGWVDEYVFSILVLAFSKW 148
Query: 297 GEVDKAFELVEKMEGLNMNPNEKTLCSLIHGFAKESRVDKALQLFEKMQILAFNPDLPLY 118
G+VDKA EL+E ME N+ N+KT CSLI+GF KESRVDKAL LF+KM+ F PD+ LY
Sbjct: 149 GKVDKACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLY 208
Query: 117 SVLIEGLCKKKELGKALQLYTQMKSTGIYPDVHVYRILI 1
V+I GLC K++ KAL LY++MK I PDV + LI
Sbjct: 209 DVIIGGLCVNKDVKKALCLYSEMKGFKIQPDVKIVTKLI 247
Score = 63.5 bits (153), Expect = 2e-08
Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 3/162 (1%)
Frame = -3
Query: 477 LGEMRGDGWDVDKFTLTPILQAYCNAGKFKEALIVFNRIFDRG---WVDEHVFTILMVSF 307
L EM G + FT I C AL + ++ G W+ T L+
Sbjct: 382 LQEMEESGIEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHS--TSLVKEL 439
Query: 306 SKWGEVDKAFELVEKMEGLNMNPNEKTLCSLIHGFAKESRVDKALQLFEKMQILAFNPDL 127
K G+ +A + + M P+ + + G K VD+AL+LF+ + + PD+
Sbjct: 440 CKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDV 499
Query: 126 PLYSVLIEGLCKKKELGKALQLYTQMKSTGIYPDVHVYRILI 1
Y++LI+GLCK + + +A L +M+ G+ P Y LI
Sbjct: 500 IAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLI 541
>ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319188|gb|EFH49610.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 1281
Score = 195 bits (495), Expect = 4e-48
Identities = 94/151 (62%), Positives = 113/151 (74%)
Frame = -3
Query: 477 LGEMRGDGWDVDKFTLTPILQAYCNAGKFKEALIVFNRIFDRGWVDEHVFTILMVSFSKW 298
L EMR G+ DKFTLTP+LQ YCN GK + AL VFN I RGW+DEH+ TIL+VSF KW
Sbjct: 202 LKEMRDCGFHFDKFTLTPVLQVYCNNGKSERALSVFNEILSRGWLDEHISTILVVSFCKW 261
Query: 297 GEVDKAFELVEKMEGLNMNPNEKTLCSLIHGFAKESRVDKALQLFEKMQILAFNPDLPLY 118
G+VDKAFEL+E +E ++ N KT C LIHGF KESR+DKA QLFEKM+ + NPD+ LY
Sbjct: 262 GQVDKAFELIEMLEERHIRLNYKTFCVLIHGFVKESRIDKAFQLFEKMRRMGMNPDIALY 321
Query: 117 SVLIEGLCKKKELGKALQLYTQMKSTGIYPD 25
VLI GLCK K+L AL LY ++K +GI PD
Sbjct: 322 DVLIGGLCKHKDLEMALSLYLEIKRSGIPPD 352
Score = 59.3 bits (142), Expect = 3e-07
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 1/142 (0%)
Frame = -3
Query: 423 ILQAYCNAGKFKEALIVFNRIFDRGWVDE-HVFTILMVSFSKWGEVDKAFELVEKMEGLN 247
+++A C A + EA +FN + +G + ++ + K GE+D+ + +M
Sbjct: 620 LIKALCKACRTTEADNLFNEMVSKGLKPSVATYNSMIDGWCKEGEIDRGLSCIVRMYEDE 679
Query: 246 MNPNEKTLCSLIHGFAKESRVDKALQLFEKMQILAFNPDLPLYSVLIEGLCKKKELGKAL 67
NP+ T SLIHG R +A+ + +M+ P+ + LI+GLC +AL
Sbjct: 680 KNPDVITYTSLIHGLCASRRPSEAISRWNEMKGKDCYPNRITFMALIQGLCNCGWSSEAL 739
Query: 66 QLYTQMKSTGIYPDVHVYRILI 1
+ +M+ + PD VY L+
Sbjct: 740 VYFREMEEKEMEPDSAVYLSLV 761
Score = 56.6 bits (135), Expect = 2e-06
Identities = 32/114 (28%), Positives = 54/114 (47%)
Frame = -3
Query: 342 DEHVFTILMVSFSKWGEVDKAFELVEKMEGLNMNPNEKTLCSLIHGFAKESRVDKALQLF 163
D + +L+ + K +A L +M + P+ T S+I G+ KE +D+ L
Sbjct: 613 DVIAYHVLIKALCKACRTTEADNLFNEMVSKGLKPSVATYNSMIDGWCKEGEIDRGLSCI 672
Query: 162 EKMQILAFNPDLPLYSVLIEGLCKKKELGKALQLYTQMKSTGIYPDVHVYRILI 1
+M NPD+ Y+ LI GLC + +A+ + +MK YP+ + LI
Sbjct: 673 VRMYEDEKNPDVITYTSLIHGLCASRRPSEAISRWNEMKGKDCYPNRITFMALI 726
>ref|XP_002534039.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223525946|gb|EEF28343.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 634
Score = 194 bits (492), Expect = 8e-48
Identities = 94/156 (60%), Positives = 112/156 (71%)
Frame = -3
Query: 468 MRGDGWDVDKFTLTPILQAYCNAGKFKEALIVFNRIFDRGWVDEHVFTILMVSFSKWGEV 289
MR G K+TLTP+LQ YCNAGKF EAL VFN I D GW+D +VF+IL++SFSKWG+V
Sbjct: 1 MRDQGLSFSKYTLTPVLQVYCNAGKFDEALNVFNEIQDHGWLDAYVFSILVLSFSKWGQV 60
Query: 288 DKAFELVEKMEGLNMNPNEKTLCSLIHGFAKESRVDKALQLFEKMQILAFNPDLPLYSVL 109
DK+FE +EKME N NEKT C+LIHGF K+SRVDK +QLF KMQ +PD+ LY VL
Sbjct: 61 DKSFEFIEKMEEQNFRLNEKTFCNLIHGFVKQSRVDKGVQLFYKMQKYGLSPDISLYDVL 120
Query: 108 IEGLCKKKELGKALQLYTQMKSTGIYPDVHVYRILI 1
I G C K+L KAL LY +MK I PD+ V LI
Sbjct: 121 IGGFCSNKKLDKALSLYAEMKMLKIQPDIGVVSKLI 156
Score = 58.2 bits (139), Expect = 7e-07
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 1/142 (0%)
Frame = -3
Query: 423 ILQAYCNAGKFKEALIVFNRIFDRGWVDEHV-FTILMVSFSKWGEVDKAFELVEKMEGLN 247
+++ A + +EA +FN + +G + V + +L+ + K G +D A + M
Sbjct: 412 LMKGLYEAHRTEEARNLFNEMVMKGLIPSVVTYNLLIDGWCKNGCIDDAMNCLCSMSAKE 471
Query: 246 MNPNEKTLCSLIHGFAKESRVDKALQLFEKMQILAFNPDLPLYSVLIEGLCKKKELGKAL 67
PN T +LI G K R D A+ L+ +M+ P+ + I GLCK + AL
Sbjct: 472 REPNVFTYTTLIDGLCKAGRPDDAVMLWNEMRRRGCRPNRVAFMGFIHGLCKCDKPEAAL 531
Query: 66 QLYTQMKSTGIYPDVHVYRILI 1
+ +M+ + PD +VY L+
Sbjct: 532 IHFHEMEEEEMEPDTYVYISLV 553