BLASTX nr result
ID: Coptis25_contig00035757
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00035757
(698 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002277745.2| PREDICTED: cell division cycle protein 48 ho... 146 3e-33
emb|CBI32813.3| unnamed protein product [Vitis vinifera] 146 3e-33
ref|XP_003520480.1| PREDICTED: cell division cycle protein 48 ho... 145 6e-33
ref|XP_003624920.1| AAA family ATPase CDC48 subfamily [Medicago ... 142 6e-32
ref|XP_002308870.1| predicted protein [Populus trichocarpa] gi|2... 139 5e-31
>ref|XP_002277745.2| PREDICTED: cell division cycle protein 48 homolog AF_1297-like [Vitis
vinifera]
Length = 1030
Score = 146 bits (369), Expect = 3e-33
Identities = 79/133 (59%), Positives = 96/133 (72%)
Frame = -2
Query: 697 VDVTVIAVTNHPDKIDPALLRPGRFDQLLYVGPLSEADCEDIFPIRV*RMPCNSDVSMKE 518
VDVTVIA TN PDKIDPALLRPGRFD+LLYVGP +E+D DIF I + ++P +SDVS+ E
Sbjct: 878 VDVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESDRADIFHIHLCKIPFSSDVSIGE 937
Query: 517 LARLTEGYTGANISLICRXXXXXXXXXXXXXXXISMAHFQIGLR*MQPSDVRSYQELSPK 338
LA LTEGYTGA+ISLICR I+M H + +R +QPS+++SYQELS K
Sbjct: 938 LAFLTEGYTGADISLICREAAIAAIEDNLDASEITMEHLKTAIRQVQPSELQSYQELSTK 997
Query: 337 FQRLVLSGTAVDD 299
FQRLV S D+
Sbjct: 998 FQRLVHSSDKRDE 1010
Score = 57.0 bits (136), Expect = 4e-06
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = -2
Query: 691 VTVIAVTNHPDKIDPALLRPGRFDQLLYVGPLSEADCEDIFPIRV*RMPCN-SDVSMKEL 515
+ VIA TN PD I+PAL RPGR D+ + +G S DI + M + SD+ +++L
Sbjct: 558 ILVIAATNRPDSIEPALRRPGRLDREMEIGVPSPGQRYDILLNLLSEMENSLSDMQIQQL 617
Query: 514 ARLTEGYTGANISLIC 467
A +T G+ GA+++ +C
Sbjct: 618 ATVTHGFVGADLAALC 633
>emb|CBI32813.3| unnamed protein product [Vitis vinifera]
Length = 956
Score = 146 bits (369), Expect = 3e-33
Identities = 79/133 (59%), Positives = 96/133 (72%)
Frame = -2
Query: 697 VDVTVIAVTNHPDKIDPALLRPGRFDQLLYVGPLSEADCEDIFPIRV*RMPCNSDVSMKE 518
VDVTVIA TN PDKIDPALLRPGRFD+LLYVGP +E+D DIF I + ++P +SDVS+ E
Sbjct: 804 VDVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESDRADIFHIHLCKIPFSSDVSIGE 863
Query: 517 LARLTEGYTGANISLICRXXXXXXXXXXXXXXXISMAHFQIGLR*MQPSDVRSYQELSPK 338
LA LTEGYTGA+ISLICR I+M H + +R +QPS+++SYQELS K
Sbjct: 864 LAFLTEGYTGADISLICREAAIAAIEDNLDASEITMEHLKTAIRQVQPSELQSYQELSTK 923
Query: 337 FQRLVLSGTAVDD 299
FQRLV S D+
Sbjct: 924 FQRLVHSSDKRDE 936
Score = 57.0 bits (136), Expect = 4e-06
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = -2
Query: 691 VTVIAVTNHPDKIDPALLRPGRFDQLLYVGPLSEADCEDIFPIRV*RMPCN-SDVSMKEL 515
+ VIA TN PD I+PAL RPGR D+ + +G S DI + M + SD+ +++L
Sbjct: 537 ILVIAATNRPDSIEPALRRPGRLDREMEIGVPSPGQRYDILLNLLSEMENSLSDMQIQQL 596
Query: 514 ARLTEGYTGANISLIC 467
A +T G+ GA+++ +C
Sbjct: 597 ATVTHGFVGADLAALC 612
>ref|XP_003520480.1| PREDICTED: cell division cycle protein 48 homolog AF_1297-like
[Glycine max]
Length = 1036
Score = 145 bits (367), Expect = 6e-33
Identities = 75/125 (60%), Positives = 93/125 (74%)
Frame = -2
Query: 697 VDVTVIAVTNHPDKIDPALLRPGRFDQLLYVGPLSEADCEDIFPIRV*RMPCNSDVSMKE 518
V+VTVIA TN PDKIDPALLRPGRFD+LLYVGP +E D E+IF I + ++PC SDVS+KE
Sbjct: 880 VNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEVDREEIFRIHLRKIPCGSDVSLKE 939
Query: 517 LARLTEGYTGANISLICRXXXXXXXXXXXXXXXISMAHFQIGLR*MQPSDVRSYQELSPK 338
LARLT+G TGA+ISLICR I+M H ++ ++ +QPS+V SYQ+LS K
Sbjct: 940 LARLTDGCTGADISLICREAAVAAIEESLDASVITMEHLKMAIKQIQPSEVHSYQKLSTK 999
Query: 337 FQRLV 323
FQR V
Sbjct: 1000 FQRAV 1004
>ref|XP_003624920.1| AAA family ATPase CDC48 subfamily [Medicago truncatula]
gi|355499935|gb|AES81138.1| AAA family ATPase CDC48
subfamily [Medicago truncatula]
Length = 1046
Score = 142 bits (358), Expect = 6e-32
Identities = 75/136 (55%), Positives = 97/136 (71%)
Frame = -2
Query: 697 VDVTVIAVTNHPDKIDPALLRPGRFDQLLYVGPLSEADCEDIFPIRV*RMPCNSDVSMKE 518
VDV VIA TN PDKIDPALLR GRFD+LLYVGP +E D E+IF I + + P +SDVSMKE
Sbjct: 855 VDVIVIAATNRPDKIDPALLRQGRFDRLLYVGPPNEIDREEIFSIHLRKTPYDSDVSMKE 914
Query: 517 LARLTEGYTGANISLICRXXXXXXXXXXXXXXXISMAHFQIGLR*MQPSDVRSYQELSPK 338
LA+LT+GYTGA+I+ ICR ++M HF++ ++ +QPS+ +SYQ+LS K
Sbjct: 915 LAQLTDGYTGADIAHICRQAALAALEESFDASVVTMKHFKMAIKQVQPSEFQSYQKLSAK 974
Query: 337 FQRLVLSGTAVDDRSC 290
FQR V S D+R+C
Sbjct: 975 FQRAVFS----DERAC 986
>ref|XP_002308870.1| predicted protein [Populus trichocarpa] gi|222854846|gb|EEE92393.1|
predicted protein [Populus trichocarpa]
Length = 1042
Score = 139 bits (350), Expect = 5e-31
Identities = 71/127 (55%), Positives = 93/127 (73%)
Frame = -2
Query: 697 VDVTVIAVTNHPDKIDPALLRPGRFDQLLYVGPLSEADCEDIFPIRV*RMPCNSDVSMKE 518
V+VTVIA TN PDKIDPALLRPGRFD+LLYVGP ++ D EDIF I + ++PC+SDV++KE
Sbjct: 895 VNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNQNDREDIFRIHLHKVPCSSDVNIKE 954
Query: 517 LARLTEGYTGANISLICRXXXXXXXXXXXXXXXISMAHFQIGLR*MQPSDVRSYQELSPK 338
LA LT+G TGA+I+LICR + M H + ++ +QP+++ SYQ+LS K
Sbjct: 955 LACLTDGCTGADIALICREAAVAAIEENIDASEVPMQHLKTAIQQVQPTEINSYQDLSAK 1014
Query: 337 FQRLVLS 317
FQRLV S
Sbjct: 1015 FQRLVHS 1021
Score = 58.5 bits (140), Expect = 1e-06
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = -2
Query: 685 VIAVTNHPDKIDPALLRPGRFDQLLYVGPLSEADCEDIFPIRV*RMPCN-SDVSMKELAR 509
VIA TN PD I+PAL RPGR D+ + +G S + DI + M + SD+ +K+LA
Sbjct: 545 VIAATNRPDSIEPALRRPGRLDREIEIGVPSPSQRLDILHTLLSEMEHSVSDMQLKQLAM 604
Query: 508 LTEGYTGANISLIC 467
T G+ GA+++ +C
Sbjct: 605 ATHGFVGADLAALC 618