BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035741
         (234 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanu...   103   3e-24
gb|AAY85212.1| RNA polymerase II second largest subunit [Hellebo...   102   3e-24
gb|AAY85191.1| RNA polymerase II second largest subunit [Argemon...   102   3e-24
gb|AAY85214.1| RNA polymerase II second largest subunit [Hibbert...   102   5e-24
gb|AAY85222.1| RNA polymerase II second largest subunit [Nandina...   102   5e-24

>gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis]
          Length = 923

 Score =  103 bits (258), Expect(3) = 3e-24
 Identities = 49/58 (84%), Positives = 51/58 (87%)
 Frame = +1

Query: 61  PYSNGSHELVEKGYIEYVDTEEEETTMISVTINDLVQARLKPEEAYSETYTHCEIHPS 234
           P   G H+LV KGYIEYVDTEEEETTMIS+TINDLV ARL PEEAYSETYTHCEIHPS
Sbjct: 519 PEDGGWHDLVAKGYIEYVDTEEEETTMISMTINDLVTARLNPEEAYSETYTHCEIHPS 576



 Score = 28.5 bits (62), Expect(3) = 3e-24
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +3

Query: 33  VLIKKKDIMALQQRES 80
           +LIKKKDI ALQQRE+
Sbjct: 503 LLIKKKDIRALQQRET 518



 Score = 24.3 bits (51), Expect(3) = 3e-24
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 2   LFIVEKQRLLSADKEKR 52
           LFIVEKQRLL   K+ R
Sbjct: 495 LFIVEKQRLLIKKKDIR 511


>gb|AAY85212.1| RNA polymerase II second largest subunit [Helleborus orientalis]
          Length = 219

 Score =  102 bits (255), Expect(3) = 3e-24
 Identities = 48/54 (88%), Positives = 51/54 (94%)
 Frame = +1

Query: 73  GSHELVEKGYIEYVDTEEEETTMISVTINDLVQARLKPEEAYSETYTHCEIHPS 234
           G H+LV KGYIEYVDTEEEETTMIS+TI+DLV ARLKPEEAYSETYTHCEIHPS
Sbjct: 140 GWHDLVSKGYIEYVDTEEEETTMISMTISDLVSARLKPEEAYSETYTHCEIHPS 193



 Score = 29.6 bits (65), Expect(3) = 3e-24
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +3

Query: 33  VLIKKKDIMALQQRES 80
           +LIKKKDI ALQQRES
Sbjct: 120 LLIKKKDIRALQQRES 135



 Score = 24.3 bits (51), Expect(3) = 3e-24
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 2   LFIVEKQRLLSADKEKR 52
           LFIVEKQRLL   K+ R
Sbjct: 112 LFIVEKQRLLIKKKDIR 128


>gb|AAY85191.1| RNA polymerase II second largest subunit [Argemone mexicana]
          Length = 219

 Score =  102 bits (255), Expect(3) = 3e-24
 Identities = 48/58 (82%), Positives = 52/58 (89%)
 Frame = +1

Query: 61  PYSNGSHELVEKGYIEYVDTEEEETTMISVTINDLVQARLKPEEAYSETYTHCEIHPS 234
           P  +G H+LV KGYIEYVDTEEEETTMIS+TI+DLV ARL PEEAYSETYTHCEIHPS
Sbjct: 136 PEEDGWHDLVAKGYIEYVDTEEEETTMISMTISDLVSARLNPEEAYSETYTHCEIHPS 193



 Score = 29.6 bits (65), Expect(3) = 3e-24
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +3

Query: 33  VLIKKKDIMALQQRES 80
           +LIKKKDI ALQQRES
Sbjct: 120 LLIKKKDIRALQQRES 135



 Score = 24.3 bits (51), Expect(3) = 3e-24
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 2   LFIVEKQRLLSADKEKR 52
           LFIVEKQRLL   K+ R
Sbjct: 112 LFIVEKQRLLIKKKDIR 128


>gb|AAY85214.1| RNA polymerase II second largest subunit [Hibbertia aspera]
          Length = 219

 Score =  102 bits (253), Expect(3) = 5e-24
 Identities = 47/58 (81%), Positives = 51/58 (87%)
 Frame = +1

Query: 61  PYSNGSHELVEKGYIEYVDTEEEETTMISVTINDLVQARLKPEEAYSETYTHCEIHPS 234
           P   G H+LV KGYIEYVDTEEEETTMIS+TINDLV AR+ PEEAYS+TYTHCEIHPS
Sbjct: 136 PEDGGWHDLVAKGYIEYVDTEEEETTMISMTINDLVTARINPEEAYSDTYTHCEIHPS 193



 Score = 29.6 bits (65), Expect(3) = 5e-24
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +3

Query: 33  VLIKKKDIMALQQRES 80
           +LIKKKDI ALQQRES
Sbjct: 120 LLIKKKDIRALQQRES 135



 Score = 24.3 bits (51), Expect(3) = 5e-24
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 2   LFIVEKQRLLSADKEKR 52
           LFIVEKQRLL   K+ R
Sbjct: 112 LFIVEKQRLLIKKKDIR 128


>gb|AAY85222.1| RNA polymerase II second largest subunit [Nandina domestica]
          Length = 218

 Score =  102 bits (253), Expect(3) = 5e-24
 Identities = 48/58 (82%), Positives = 50/58 (86%)
 Frame = +1

Query: 61  PYSNGSHELVEKGYIEYVDTEEEETTMISVTINDLVQARLKPEEAYSETYTHCEIHPS 234
           P   G H+LV KGYIEYVDTEEEETTMIS+TINDLV AR  PEEAYSETYTHCEIHPS
Sbjct: 136 PEEGGWHDLVSKGYIEYVDTEEEETTMISMTINDLVSARNNPEEAYSETYTHCEIHPS 193



 Score = 29.6 bits (65), Expect(3) = 5e-24
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +3

Query: 33  VLIKKKDIMALQQRES 80
           +LIKKKDI ALQQRES
Sbjct: 120 LLIKKKDIRALQQRES 135



 Score = 24.3 bits (51), Expect(3) = 5e-24
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 2   LFIVEKQRLLSADKEKR 52
           LFIVEKQRLL   K+ R
Sbjct: 112 LFIVEKQRLLIKKKDIR 128