BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035735
         (306 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containi...   136   2e-30
ref|NP_172391.2| pentatricopeptide repeat-containing protein [Ar...   129   2e-28
ref|XP_002892489.1| pentatricopeptide repeat-containing protein ...   127   7e-28
ref|XP_002512497.1| pentatricopeptide repeat-containing protein,...   121   5e-26
ref|XP_002330193.1| predicted protein [Populus trichocarpa] gi|2...   121   7e-26

>ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
           [Vitis vinifera]
          Length = 485

 Score =  136 bits (342), Expect = 2e-30
 Identities = 57/100 (57%), Positives = 81/100 (81%)
 Frame = +2

Query: 5   IWPDQYTFAPLLKSCTNVTEVSFGRKVHGEIVRVGFELYNGVQIGLVEFYTSCKRMGDAK 184
           IWPD++TFAPLLKSC+ + +   G+ VHG ++ VGFE ++ ++IG+++ YTSC RM DAK
Sbjct: 103 IWPDEFTFAPLLKSCSGICDNRIGKGVHGVVIVVGFERFSSIRIGIIDLYTSCGRMEDAK 162

Query: 185 RVFDMMPVKDVVVWNMMIRGSCKEGNVDMGFHVFQQMRER 304
           +VFD M  +DV+VWNMMIRG CK G+++MGF +F+QMR+R
Sbjct: 163 KVFDEMLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQMRDR 202



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
 Frame = +2

Query: 11  PDQYTFAPLLKSCTNVTEVSFGRKVHG--EIVRVGFELYNGVQIG--LVEFYTSCKRMGD 178
           PD  T   +L  C  +  V  G  +H   E  R+   L + + +G  LV+FY  C  +  
Sbjct: 237 PDDATVVTILPVCARLGAVDVGEWIHSYAESSRL---LRDFISVGNSLVDFYCKCGILET 293

Query: 179 AKRVFDMMPVKDVVVWNMMIRGSCKEGNVDMGFHVFQQM 295
           A RVF+ MP K+VV WN MI G    G  ++G  +F++M
Sbjct: 294 AWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEEM 332


>ref|NP_172391.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75099767|sp|O80488.1|PPR23_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g09190 gi|3249103|gb|AAC24086.1| Contains similarity
           to membrane-associated salt-inducible protein homolog
           TM021B04.10 gb|2191192 from A. thaliana BAC gb|AF007271
           [Arabidopsis thaliana] gi|28393182|gb|AAO42022.1|
           unknown protein [Arabidopsis thaliana]
           gi|332190289|gb|AEE28410.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 484

 Score =  129 bits (324), Expect = 2e-28
 Identities = 56/100 (56%), Positives = 79/100 (79%)
 Frame = +2

Query: 5   IWPDQYTFAPLLKSCTNVTEVSFGRKVHGEIVRVGFELYNGVQIGLVEFYTSCKRMGDAK 184
           IW D+YT+APLLKSC++++++ FG+ VHGE++R GF     ++IG+VE YTS  RMGDA+
Sbjct: 98  IWADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQ 157

Query: 185 RVFDMMPVKDVVVWNMMIRGSCKEGNVDMGFHVFQQMRER 304
           +VFD M  ++VVVWN+MIRG C  G+V+ G H+F+QM ER
Sbjct: 158 KVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSER 197


>ref|XP_002892489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297338331|gb|EFH68748.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 1014

 Score =  127 bits (320), Expect = 7e-28
 Identities = 56/100 (56%), Positives = 77/100 (77%)
 Frame = +2

Query: 5   IWPDQYTFAPLLKSCTNVTEVSFGRKVHGEIVRVGFELYNGVQIGLVEFYTSCKRMGDAK 184
           IW D+YT+APLLKSC++++++ FG+ VHGE++R GF     V+IG+VE YTS  RMGDA+
Sbjct: 620 IWADEYTYAPLLKSCSSLSDLRFGKCVHGEVIRTGFHRLGKVRIGVVELYTSGGRMGDAQ 679

Query: 185 RVFDMMPVKDVVVWNMMIRGSCKEGNVDMGFHVFQQMRER 304
           +VFD MP ++VVVWN+M+RG C  G+V  G   F+QM ER
Sbjct: 680 KVFDEMPERNVVVWNLMVRGFCDSGDVQRGLSFFKQMSER 719


>ref|XP_002512497.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548458|gb|EEF49949.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 459

 Score =  121 bits (304), Expect = 5e-26
 Identities = 48/100 (48%), Positives = 78/100 (78%)
 Frame = +2

Query: 5   IWPDQYTFAPLLKSCTNVTEVSFGRKVHGEIVRVGFELYNGVQIGLVEFYTSCKRMGDAK 184
           IWPD+YTFAPLLK+C+++ ++  G+ +H +++ +GFE +  +QIG+VE Y +C  + D+K
Sbjct: 261 IWPDEYTFAPLLKACSSLYDLKLGQCIHKDVIMIGFECFCSIQIGVVELYANCGLLEDSK 320

Query: 185 RVFDMMPVKDVVVWNMMIRGSCKEGNVDMGFHVFQQMRER 304
           +VFD M  +D +VWN+MIRG C+ G+V+MG ++F++M ER
Sbjct: 321 KVFDEMRERDSIVWNLMIRGYCRRGDVNMGLYLFRKMSER 360


>ref|XP_002330193.1| predicted protein [Populus trichocarpa] gi|222871649|gb|EEF08780.1|
           predicted protein [Populus trichocarpa]
          Length = 485

 Score =  121 bits (303), Expect = 7e-26
 Identities = 52/100 (52%), Positives = 78/100 (78%)
 Frame = +2

Query: 5   IWPDQYTFAPLLKSCTNVTEVSFGRKVHGEIVRVGFELYNGVQIGLVEFYTSCKRMGDAK 184
           IWPD+YT APLLK+C+++  +  G+ +H E++ VGFE ++ ++IG++E Y+SC  M DA+
Sbjct: 103 IWPDEYTLAPLLKACSSLGVLQLGKCMHKEVLVVGFEGFSAIRIGVIELYSSCGVMEDAE 162

Query: 185 RVFDMMPVKDVVVWNMMIRGSCKEGNVDMGFHVFQQMRER 304
           +VFD M  +DV+VWN+MI G CK G+VDMG  +F+QMR+R
Sbjct: 163 KVFDEMYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMRKR 202



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
 Frame = +2

Query: 11  PDQYTFAPLLKSCTNVTEVSFGRKVHGEIVRVG-FELYNGVQIGLVEFYTSCKRMGDAKR 187
           PD+ T   +L  C  +  V  G+ +H      G +  +  V   LV+FY        A+R
Sbjct: 237 PDEATVVTVLPICARLGSVDVGKWIHSYAKSSGLYRDFVAVGNALVDFYNKSGMFETARR 296

Query: 188 VFDMMPVKDVVVWNMMIRGSCKEGNVDMGFHVFQQM 295
           VFD MP K+V+ WN +I G    GN ++G  + ++M
Sbjct: 297 VFDEMPRKNVISWNTLISGLALNGNGELGVELLEEM 332