BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035697
         (299 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat...   113   2e-23
emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]   113   2e-23
ref|NP_564961.1| pentatricopeptide repeat-containing protein [Ar...   108   5e-22
ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arab...   100   2e-19
ref|XP_003517819.1| PREDICTED: putative pentatricopeptide repeat...   100   2e-19

>ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  113 bits (282), Expect = 2e-23
 Identities = 57/99 (57%), Positives = 75/99 (75%)
 Frame = -3

Query: 297 LASSLQACGKISNYELGSQIHGLVAKTGVGSNEFVQNSLIDMYCKSYSVDTAYKVFNEVQ 118
           LASSL ACG IS  +LG+QIHG + KTG   N+FVQN+LIDMY K   V +A K+F +++
Sbjct: 407 LASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIK 465

Query: 117 EKSLITWNSMIWGFTQSGDAAEALNLLDQMHYQNLEMDK 1
           EKSL+TWNSMI GF+Q+G + EA+ L DQM+   ++MDK
Sbjct: 466 EKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDK 504



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 32/96 (33%), Positives = 56/96 (58%)
 Frame = -3

Query: 291 SSLQACGKISNYELGSQIHGLVAKTGVGSNEFVQNSLIDMYCKSYSVDTAYKVFNEVQEK 112
           S L+AC    +  +G ++HG V K G  S+  V+ SL+ MY +   +D A K F+ +  +
Sbjct: 105 SVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIR 164

Query: 111 SLITWNSMIWGFTQSGDAAEALNLLDQMHYQNLEMD 4
            ++ W+S++  F Q+G A+E L++  QM  + +E D
Sbjct: 165 DVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPD 200



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 30/95 (31%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
 Frame = -3

Query: 285 LQACGKISNYELGSQIHGLVAKTGVGSN-EFVQNSLIDMYCKSYSVDTAYKVFNEVQEKS 109
           L AC ++   + G  +HG V +  +    +F+  +L+++Y  + ++   +KVF  ++EK+
Sbjct: 309 LCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKT 368

Query: 108 LITWNSMIWGFTQSGDAAEALNLLDQMHYQNLEMD 4
           +++WN++I  FT++G   EAL L  QM  Q L  D
Sbjct: 369 ILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPD 403



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 32/96 (33%), Positives = 50/96 (52%)
 Frame = -3

Query: 297 LASSLQACGKISNYELGSQIHGLVAKTGVGSNEFVQNSLIDMYCKSYSVDTAYKVFNEVQ 118
           + S  +AC ++ +  LG  +HG V +  + SN  + NSLI MY K   + +A ++F  V 
Sbjct: 204 MLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVP 263

Query: 117 EKSLITWNSMIWGFTQSGDAAEALNLLDQMHYQNLE 10
            +    W  MI  + QSG   EALN+  +M    +E
Sbjct: 264 CRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKME 299



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 26/88 (29%), Positives = 48/88 (54%)
 Frame = -3

Query: 291 SSLQACGKISNYELGSQIHGLVAKTGVGSNEFVQNSLIDMYCKSYSVDTAYKVFNEVQEK 112
           S +QAC  +   E G  +H  +   G+  + ++  +L DMY K   +  A+ VF+ + E+
Sbjct: 509 SVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSER 568

Query: 111 SLITWNSMIWGFTQSGDAAEALNLLDQM 28
           S+++W+ MI G+   G     ++L +QM
Sbjct: 569 SIVSWSVMIAGYGMHGQINATISLFNQM 596


>emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  113 bits (282), Expect = 2e-23
 Identities = 57/99 (57%), Positives = 75/99 (75%)
 Frame = -3

Query: 297 LASSLQACGKISNYELGSQIHGLVAKTGVGSNEFVQNSLIDMYCKSYSVDTAYKVFNEVQ 118
           LASSL ACG IS  +LG+QIHG + KTG   N+FVQN+LIDMY K   V +A K+F +++
Sbjct: 604 LASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIK 662

Query: 117 EKSLITWNSMIWGFTQSGDAAEALNLLDQMHYQNLEMDK 1
           EKSL+TWNSMI GF+Q+G + EA+ L DQM+   ++MDK
Sbjct: 663 EKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDK 701



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
 Frame = -3

Query: 273 GKISNYELGSQIHGLVAKTGVGSN-EFVQNSLIDMYCKSYSVDTAYKVFNEVQEKSLITW 97
           G++   + G  +HG V +  +    +F+  +L+++Y  + ++   +KVF  ++EK++++W
Sbjct: 510 GRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSW 569

Query: 96  NSMIWGFTQSGDAAEALNLLDQMHYQNLEMD 4
           N++I  FT++G   EAL L  QM  Q L  D
Sbjct: 570 NTLISIFTRNGQPEEALLLFVQMQTQGLMPD 600



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 26/88 (29%), Positives = 48/88 (54%)
 Frame = -3

Query: 291 SSLQACGKISNYELGSQIHGLVAKTGVGSNEFVQNSLIDMYCKSYSVDTAYKVFNEVQEK 112
           S +QAC  +   E G  +H  +   G+  + ++  +L DMY K   +  A+ VF+ + E+
Sbjct: 706 SVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSER 765

Query: 111 SLITWNSMIWGFTQSGDAAEALNLLDQM 28
           S+++W+ MI G+   G     ++L +QM
Sbjct: 766 SIVSWSVMIAGYGMHGQINATISLFNQM 793


>ref|NP_564961.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75168871|sp|Q9C507.1|PP111_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At1g69350, mitochondrial; Flags: Precursor
           gi|12325094|gb|AAG52503.1|AC018364_21 hypothetical
           protein; 27026-24663 [Arabidopsis thaliana]
           gi|12597785|gb|AAG60097.1|AC073178_8 PPR-repeat protein,
           putative [Arabidopsis thaliana]
           gi|332196793|gb|AEE34914.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 787

 Score =  108 bits (270), Expect = 5e-22
 Identities = 54/99 (54%), Positives = 75/99 (75%)
 Frame = -3

Query: 297 LASSLQACGKISNYELGSQIHGLVAKTGVGSNEFVQNSLIDMYCKSYSVDTAYKVFNEVQ 118
           LASS+ AC       LG QIHG V +T V S+EFVQNSLIDMY KS SVD+A  VFN+++
Sbjct: 408 LASSISACENAGLVPLGKQIHGHVIRTDV-SDEFVQNSLIDMYSKSGSVDSASTVFNQIK 466

Query: 117 EKSLITWNSMIWGFTQSGDAAEALNLLDQMHYQNLEMDK 1
            +S++TWNSM+ GF+Q+G++ EA++L D M++  LEM++
Sbjct: 467 HRSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNE 505



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 27/97 (27%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
 Frame = -3

Query: 291 SSLQAC-GKISNYELGSQIHGLVAKTGVGSNEFVQNSLIDMYCKSYSVDTAYKVFNEVQE 115
           S L+AC G   +  +G ++HG + K GV  +  ++ SL+ MY ++ ++  A KVF+ +  
Sbjct: 105 SVLRACAGSREHLSVGGKVHGRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPV 164

Query: 114 KSLITWNSMIWGFTQSGDAAEALNLLDQMHYQNLEMD 4
           + L+ W++++    ++G+  +AL +   M    +E D
Sbjct: 165 RDLVAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPD 201


>ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata] gi|297333071|gb|EFH63489.1| hypothetical protein
            ARALYDRAFT_476061 [Arabidopsis lyrata subsp. lyrata]
          Length = 1347

 Score =  100 bits (248), Expect = 2e-19
 Identities = 50/99 (50%), Positives = 72/99 (72%)
 Frame = -3

Query: 297  LASSLQACGKISNYELGSQIHGLVAKTGVGSNEFVQNSLIDMYCKSYSVDTAYKVFNEVQ 118
            LAS + AC       LG QIHG V +T V S+EFVQNS+IDMY KS  V+ A  VF++++
Sbjct: 966  LASIISACENTGLVRLGKQIHGHVIRTDV-SDEFVQNSVIDMYSKSGFVNLACTVFDQIK 1024

Query: 117  EKSLITWNSMIWGFTQSGDAAEALNLLDQMHYQNLEMDK 1
             +S++TWNSM+ GF+Q+G++ EA+NL D M++  LE++K
Sbjct: 1025 HRSIVTWNSMLCGFSQNGNSLEAINLFDYMYHSCLEINK 1063



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 28/86 (32%), Positives = 47/86 (54%)
 Frame = -3

Query: 285  LQACGKISNYELGSQIHGLVAKTGVGSNEFVQNSLIDMYCKSYSVDTAYKVFNEVQEKSL 106
            +QAC  I + E G  +H  +   G+  + F   +LIDMY K   ++TA  VF  +  +S+
Sbjct: 1070 IQACSSIGSLEKGRWVHHKLIVCGI-KDLFTDTALIDMYAKCGDLNTAETVFRAMSNRSI 1128

Query: 105  ITWNSMIWGFTQSGDAAEALNLLDQM 28
            ++W+SMI  +   G    A++  +QM
Sbjct: 1129 VSWSSMINAYGMHGRIGSAISTFNQM 1154


>ref|XP_003517819.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial-like [Glycine max]
          Length = 828

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 49/99 (49%), Positives = 70/99 (70%)
 Frame = -3

Query: 297 LASSLQACGKISNYELGSQIHGLVAKTGVGSNEFVQNSLIDMYCKSYSVDTAYKVFNEVQ 118
           LASS+ AC   S+   G QIHG V K G  ++EFVQNSL+DMY K   VD AY +F+++ 
Sbjct: 409 LASSISACAGASSVRFGQQIHGHVTKRGF-ADEFVQNSLMDMYSKCGFVDLAYTIFDKIW 467

Query: 117 EKSLITWNSMIWGFTQSGDAAEALNLLDQMHYQNLEMDK 1
           EKS++TWN MI GF+Q+G + EAL L D+M +  +++++
Sbjct: 468 EKSIVTWNCMICGFSQNGISVEALKLFDEMCFNCMDINE 506



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 26/88 (29%), Positives = 53/88 (60%)
 Frame = -3

Query: 291 SSLQACGKISNYELGSQIHGLVAKTGVGSNEFVQNSLIDMYCKSYSVDTAYKVFNEVQEK 112
           S ++A   +    +G ++HG + KTG+G++  +  SL+ MY +   +  A KVF+E++ +
Sbjct: 107 SVIKAISVVGGLVVGRKVHGRIVKTGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVR 166

Query: 111 SLITWNSMIWGFTQSGDAAEALNLLDQM 28
            L++W+S++  + ++G   E L +L  M
Sbjct: 167 DLVSWSSVVACYVENGRPREGLEMLRWM 194



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 29/88 (32%), Positives = 47/88 (53%)
 Frame = -3

Query: 291 SSLQACGKISNYELGSQIHGLVAKTGVGSNEFVQNSLIDMYCKSYSVDTAYKVFNEVQEK 112
           S++QAC        G  IH  +  +GV  + ++  +L+DMY K   + TA  VFN + EK
Sbjct: 511 SAIQACSNSGYLLKGKWIHHKLVVSGVQKDLYIDTALVDMYAKCGDLKTAQGVFNSMPEK 570

Query: 111 SLITWNSMIWGFTQSGDAAEALNLLDQM 28
           S+++W++MI  +   G    A  L  +M
Sbjct: 571 SVVSWSAMIAAYGIHGQITAATTLFTKM 598