BLASTX nr result
ID: Coptis25_contig00035575
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00035575
(279 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containi... 137 1e-30
ref|XP_003637306.1| Pentatricopeptide repeat-containing protein,... 127 9e-28
ref|XP_002528370.1| pentatricopeptide repeat-containing protein,... 126 2e-27
ref|XP_002322376.1| predicted protein [Populus trichocarpa] gi|2... 119 3e-25
ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containi... 118 6e-25
>ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Glycine max]
Length = 693
Score = 137 bits (344), Expect = 1e-30
Identities = 61/92 (66%), Positives = 81/92 (88%)
Frame = +3
Query: 3 NLDRAHKLMDQMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRLLQMGFGHGLSADRFTYT 182
N +RA++LM+ M +EG SPN+CTYN IVDGLCKKGRVQEAY++L+ GF +GL AD+ TYT
Sbjct: 393 NFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYT 452
Query: 183 ILISEYCRRSDTKQAIVLFNKMLKTGCQPDMH 278
ILISE+C++++ KQA+VLFNKM+K+G QPD+H
Sbjct: 453 ILISEHCKQAEIKQALVLFNKMVKSGIQPDIH 484
Score = 65.1 bits (157), Expect = 6e-09
Identities = 31/91 (34%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Frame = +3
Query: 3 NLDRAHKLMDQMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRL-LQMGFGHGLSADRFTY 179
++ +A +++++MV G PN+ T+ ++DGLCKKG ++A+RL L++ + TY
Sbjct: 287 SVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTY 346
Query: 180 TILISEYCRRSDTKQAIVLFNKMLKTGCQPD 272
T +IS YCR +A +L ++M + G P+
Sbjct: 347 TAMISGYCRDEKMNRAEMLLSRMKEQGLAPN 377
Score = 57.8 bits (138), Expect = 9e-07
Identities = 28/89 (31%), Positives = 48/89 (53%)
Frame = +3
Query: 6 LDRAHKLMDQMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRLLQMGFGHGLSADRFTYTI 185
+ +A L ++MVK G P+I +Y T++ C++ R++E+ + GL TYT
Sbjct: 464 IKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTS 523
Query: 186 LISEYCRRSDTKQAIVLFNKMLKTGCQPD 272
+I YCR + + A+ F++M GC D
Sbjct: 524 MICGYCREGNLRLALKFFHRMSDHGCASD 552
Score = 56.2 bits (134), Expect = 3e-06
Identities = 23/70 (32%), Positives = 45/70 (64%)
Frame = +3
Query: 48 GCSPNICTYNTIVDGLCKKGRVQEAYRLLQMGFGHGLSADRFTYTILISEYCRRSDTKQA 227
G PN+ + +++GLCK+G V++A+ +L+ G G + +T+T LI C++ T++A
Sbjct: 267 GLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKA 326
Query: 228 IVLFNKMLKT 257
LF K++++
Sbjct: 327 FRLFLKLVRS 336
Score = 55.1 bits (131), Expect = 6e-06
Identities = 26/90 (28%), Positives = 45/90 (50%)
Frame = +3
Query: 6 LDRAHKLMDQMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRLLQMGFGHGLSADRFTYTI 185
++ A L D+M G PN +Y +V G CK G V E+ R L G D T ++
Sbjct: 183 VEYAENLFDEMCARGVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSL 242
Query: 186 LISEYCRRSDTKQAIVLFNKMLKTGCQPDM 275
++ E+C + +A+ F + + G +P++
Sbjct: 243 IVREFCEKGFVTRALWYFRRFCEMGLRPNL 272
>ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula] gi|355503241|gb|AES84444.1|
Pentatricopeptide repeat-containing protein, partial
[Medicago truncatula]
Length = 603
Score = 127 bits (319), Expect = 9e-28
Identities = 56/92 (60%), Positives = 75/92 (81%)
Frame = +3
Query: 3 NLDRAHKLMDQMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRLLQMGFGHGLSADRFTYT 182
N +RA+ LM+ M EG SPN+CTYN IV+GLCK+GRVQEAY++L+ GF +GL D+FTY
Sbjct: 396 NFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYN 455
Query: 183 ILISEYCRRSDTKQAIVLFNKMLKTGCQPDMH 278
IL+SE+C++ + +QA+ LFNKMLK G QPD+H
Sbjct: 456 ILMSEHCKQENIRQALALFNKMLKIGIQPDIH 487
Score = 66.6 bits (161), Expect = 2e-09
Identities = 31/91 (34%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = +3
Query: 3 NLDRAHKLMDQMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRL-LQMGFGHGLSADRFTY 179
++ +A +++++MV +G PN+ T+ +++DGLCKKG ++A+RL L++ + TY
Sbjct: 290 SIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTY 349
Query: 180 TILISEYCRRSDTKQAIVLFNKMLKTGCQPD 272
T +IS YCR +A +L ++M + G P+
Sbjct: 350 TAMISGYCREDKLNRAEMLLSRMKEQGLVPN 380
Score = 57.4 bits (137), Expect = 1e-06
Identities = 27/90 (30%), Positives = 49/90 (54%)
Frame = +3
Query: 3 NLDRAHKLMDQMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRLLQMGFGHGLSADRFTYT 182
N+ +A L ++M+K G P+I +Y T++ C++ R++E+ + G+ TYT
Sbjct: 466 NIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYT 525
Query: 183 ILISEYCRRSDTKQAIVLFNKMLKTGCQPD 272
+I YCR + A+ F+++ GC PD
Sbjct: 526 SMICGYCREGNLTLAMKFFHRLSDHGCAPD 555
Score = 57.0 bits (136), Expect = 2e-06
Identities = 23/75 (30%), Positives = 48/75 (64%)
Frame = +3
Query: 33 QMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRLLQMGFGHGLSADRFTYTILISEYCRRS 212
++V G PN+ + +++GLCK+G +++A+ +L+ G G + +T+T LI C++
Sbjct: 265 RLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKG 324
Query: 213 DTKQAIVLFNKMLKT 257
T++A LF K++++
Sbjct: 325 WTEKAFRLFLKLVRS 339
>ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223532238|gb|EEF34042.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 712
Score = 126 bits (316), Expect = 2e-27
Identities = 58/92 (63%), Positives = 72/92 (78%)
Frame = +3
Query: 3 NLDRAHKLMDQMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRLLQMGFGHGLSADRFTYT 182
N RA++LMD M KEG +PNI TYN I+DGLCKKGR EAY+LL+ G GL AD+ TYT
Sbjct: 419 NFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYT 478
Query: 183 ILISEYCRRSDTKQAIVLFNKMLKTGCQPDMH 278
ILISE+CR++D KQA+ +F++M K G QPDMH
Sbjct: 479 ILISEFCRQTDNKQALAIFSRMFKVGLQPDMH 510
Score = 65.5 bits (158), Expect = 4e-09
Identities = 29/91 (31%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = +3
Query: 3 NLDRAHKLMDQMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRL-LQMGFGHGLSADRFTY 179
++ +A +++++MV++G PN+ T+ ++DGLCKKG ++A+RL L++ + +TY
Sbjct: 313 SIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTY 372
Query: 180 TILISEYCRRSDTKQAIVLFNKMLKTGCQPD 272
T +I+ YC+ +A +L +M + G P+
Sbjct: 373 TCMINGYCKEEKLNRAEMLLIRMKEQGLVPN 403
Score = 65.5 bits (158), Expect = 4e-09
Identities = 31/87 (35%), Positives = 49/87 (56%)
Frame = +3
Query: 12 RAHKLMDQMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRLLQMGFGHGLSADRFTYTILI 191
+A + +M K G P++ TYN ++ C++ +V+E+ +L + G GL + TYT +I
Sbjct: 492 QALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMI 551
Query: 192 SEYCRRSDTKQAIVLFNKMLKTGCQPD 272
YCR AI F+KM GC+PD
Sbjct: 552 CGYCRDGHISSAIKFFHKMRDYGCKPD 578
Score = 55.8 bits (133), Expect = 3e-06
Identities = 25/84 (29%), Positives = 45/84 (53%)
Frame = +3
Query: 3 NLDRAHKLMDQMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRLLQMGFGHGLSADRFTYT 182
++ A K +M GC P+ TY ++ GLC + ++ EA +L + +GLS T
Sbjct: 559 HISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRV 618
Query: 183 ILISEYCRRSDTKQAIVLFNKMLK 254
L EYC++ D+ A+++ ++ K
Sbjct: 619 TLAYEYCKQGDSATAMIILERLEK 642
Score = 55.5 bits (132), Expect = 4e-06
Identities = 24/84 (28%), Positives = 53/84 (63%)
Frame = +3
Query: 6 LDRAHKLMDQMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRLLQMGFGHGLSADRFTYTI 185
++RA + V+ G +PN+ ++++++GLCK G +++A+ +L+ G + +T+T
Sbjct: 279 VNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTA 338
Query: 186 LISEYCRRSDTKQAIVLFNKMLKT 257
LI C++ T++A LF K++++
Sbjct: 339 LIDGLCKKGWTEKAFRLFLKLVRS 362
>ref|XP_002322376.1| predicted protein [Populus trichocarpa] gi|222869372|gb|EEF06503.1|
predicted protein [Populus trichocarpa]
Length = 715
Score = 119 bits (297), Expect = 3e-25
Identities = 57/92 (61%), Positives = 69/92 (75%)
Frame = +3
Query: 3 NLDRAHKLMDQMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRLLQMGFGHGLSADRFTYT 182
N ++A++LMD M KEG S NI TYN +D LCKKGR EA +LL+ GF GL AD TYT
Sbjct: 422 NFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRLGLQADTVTYT 481
Query: 183 ILISEYCRRSDTKQAIVLFNKMLKTGCQPDMH 278
ILISE CRR+DT++A+V F+KM K G QPDMH
Sbjct: 482 ILISELCRRADTREALVFFSKMFKAGVQPDMH 513
Score = 65.1 bits (157), Expect = 6e-09
Identities = 30/91 (32%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Frame = +3
Query: 3 NLDRAHKLMDQMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRL-LQMGFGHGLSADRFTY 179
++ +A +++++MVK+G PN+ T+ ++DGLCKKG ++A+RL L++ + TY
Sbjct: 316 SIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTY 375
Query: 180 TILISEYCRRSDTKQAIVLFNKMLKTGCQPD 272
T +I YC+ +A +L ++M + G P+
Sbjct: 376 TSMIHGYCKEDKLNRAEMLLSRMKEQGLVPN 406
Score = 61.6 bits (148), Expect = 6e-08
Identities = 29/80 (36%), Positives = 45/80 (56%)
Frame = +3
Query: 33 QMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRLLQMGFGHGLSADRFTYTILISEYCRRS 212
+M K G P++ TYNT++ ++ R++E+ +L G GL + TYT +I YCR
Sbjct: 502 KMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRDR 561
Query: 213 DTKQAIVLFNKMLKTGCQPD 272
+ A+ FN+M GC PD
Sbjct: 562 NVSLALKFFNRMSDHGCTPD 581
Score = 59.7 bits (143), Expect = 2e-07
Identities = 28/84 (33%), Positives = 47/84 (55%)
Frame = +3
Query: 3 NLDRAHKLMDQMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRLLQMGFGHGLSADRFTYT 182
N+ A K ++M GC+P+ TY ++ GLCK+ ++ EA +L + GLS T
Sbjct: 562 NVSLALKFFNRMSDHGCTPDSLTYGALISGLCKESKLDEACQLYEAMVDKGLSPCEVTRL 621
Query: 183 ILISEYCRRSDTKQAIVLFNKMLK 254
L EYC++ D+ A+V+ ++ K
Sbjct: 622 TLAYEYCKQDDSATAMVILERLDK 645
Score = 57.8 bits (138), Expect = 9e-07
Identities = 25/84 (29%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Frame = +3
Query: 30 DQMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRLLQMGFGHGLSADRFTYTILISEYCRR 209
D+ V+ G PN+ + ++++GLCK+G +++A+ +L+ G + +T+T LI C++
Sbjct: 290 DKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKK 349
Query: 210 SDTKQAIVLFNKMLKT-GCQPDMH 278
T++A LF K++++ +P++H
Sbjct: 350 GWTEKAFRLFLKLVRSDDYKPNVH 373
>ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Vitis vinifera]
Length = 708
Score = 118 bits (295), Expect = 6e-25
Identities = 57/92 (61%), Positives = 69/92 (75%)
Frame = +3
Query: 3 NLDRAHKLMDQMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRLLQMGFGHGLSADRFTYT 182
N RA++LMD M KEG SPNI TYN I+DGLCKKG + EAYRLL HGL AD TYT
Sbjct: 415 NFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYT 474
Query: 183 ILISEYCRRSDTKQAIVLFNKMLKTGCQPDMH 278
IL+S +CR++DT +++V FNKMLK G PD+H
Sbjct: 475 ILMSVHCRQADTNRSLVFFNKMLKVGFTPDIH 506
Score = 70.1 bits (170), Expect = 2e-10
Identities = 32/91 (35%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Frame = +3
Query: 3 NLDRAHKLMDQMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRL-LQMGFGHGLSADRFTY 179
++ +A +L+++MV+ G PN+ T+ T++DGLCKKG ++A+RL L++ G + TY
Sbjct: 309 SIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTY 368
Query: 180 TILISEYCRRSDTKQAIVLFNKMLKTGCQPD 272
T +I+ YC+ +A +L ++M + G P+
Sbjct: 369 TAMINGYCKEDKLNRAEMLLSRMQEQGLVPN 399
Score = 64.7 bits (156), Expect = 7e-09
Identities = 30/88 (34%), Positives = 52/88 (59%)
Frame = +3
Query: 9 DRAHKLMDQMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRLLQMGFGHGLSADRFTYTIL 188
+R+ ++M+K G +P+I +Y T++ C++ +++E+ RL + GL + TYT +
Sbjct: 487 NRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSM 546
Query: 189 ISEYCRRSDTKQAIVLFNKMLKTGCQPD 272
I YCR +T A+ LF +M GC PD
Sbjct: 547 ICGYCRYGNTSLAVKLFQRMSNHGCAPD 574
Score = 62.0 bits (149), Expect = 5e-08
Identities = 27/83 (32%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = +3
Query: 33 QMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRLLQMGFGHGLSADRFTYTILISEYCRRS 212
+MV+ G +PN+ + +++GLCK+G +++A+ LL+ G + +T+T LI C++
Sbjct: 284 KMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKG 343
Query: 213 DTKQAIVLFNKMLKT-GCQPDMH 278
T++A LF K++++ G +P++H
Sbjct: 344 WTEKAFRLFLKLVRSDGYKPNVH 366
Score = 58.2 bits (139), Expect = 7e-07
Identities = 28/84 (33%), Positives = 44/84 (52%)
Frame = +3
Query: 3 NLDRAHKLMDQMVKEGCSPNICTYNTIVDGLCKKGRVQEAYRLLQMGFGHGLSADRFTYT 182
N A KL +M GC+P+ TY ++ GLCK+ ++ +A L GLS T
Sbjct: 555 NTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRL 614
Query: 183 ILISEYCRRSDTKQAIVLFNKMLK 254
L EYC++ D+ AI + +++ K
Sbjct: 615 TLAYEYCKKDDSSTAINVLDRLEK 638