BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035517
         (354 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002527276.1| pentatricopeptide repeat-containing protein,...   167   6e-40
ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat...   164   5e-39
ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat...   162   3e-38
ref|NP_200728.2| pentatricopeptide repeat-containing protein [Ar...   157   9e-37
ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat...   149   2e-34

>ref|XP_002527276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223533369|gb|EEF35120.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 507

 Score =  167 bits (424), Expect = 6e-40
 Identities = 79/117 (67%), Positives = 95/117 (81%)
 Frame = +2

Query: 2   VRMKLMEFYGKCGEFGDARRLFGGMPKGDVAASTVMICCFCYHGFVEDAFEVFDSTHFKD 181
           +R+KLM+FYGKCG   DA RLF  MP+ DV AST+MI  +  HG +++A  VF+ T  KD
Sbjct: 272 MRLKLMKFYGKCGSLKDAERLFDEMPERDVVASTIMINSYFEHGLIQEAIRVFNLTKSKD 331

Query: 182 TVCWTAMIDGLVRNEEMNKALELFRKMQMENVRPNEVTVVCVLSACSQLGALELRRW 352
           TVCWTA+IDGLVRN EMN+ALE+FR+MQ E+VRPNEVT+VCVLSACSQLG LEL RW
Sbjct: 332 TVCWTAVIDGLVRNGEMNRALEVFREMQREDVRPNEVTIVCVLSACSQLGTLELGRW 388


>ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  164 bits (416), Expect = 5e-39
 Identities = 82/117 (70%), Positives = 92/117 (78%)
 Frame = +2

Query: 2   VRMKLMEFYGKCGEFGDARRLFGGMPKGDVAASTVMICCFCYHGFVEDAFEVFDSTHFKD 181
           VR+++ME YGKCGE GDARR+F  MP+ DV ASTVMI  +   G VE+A  VF     KD
Sbjct: 184 VRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVFSRVRRKD 242

Query: 182 TVCWTAMIDGLVRNEEMNKALELFRKMQMENVRPNEVTVVCVLSACSQLGALELRRW 352
           TVCWTAMIDG VRNEEMN+ALE FR MQ ENVRPNE T+VCVLSACSQLGALE+ RW
Sbjct: 243 TVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRW 299



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 28/70 (40%), Positives = 41/70 (58%)
 Frame = +2

Query: 131 GFVEDAFEVFDSTHFKDTVCWTAMIDGLVRNEEMNKALELFRKMQMENVRPNEVTVVCVL 310
           G +++A  VFD    +D + +  MI GL  N +  +A+ELFR M    +RP  VT V VL
Sbjct: 327 GSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVL 386

Query: 311 SACSQLGALE 340
           +ACS  G ++
Sbjct: 387 NACSHGGLVD 396


>ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  162 bits (410), Expect = 3e-38
 Identities = 81/117 (69%), Positives = 91/117 (77%)
 Frame = +2

Query: 2   VRMKLMEFYGKCGEFGDARRLFGGMPKGDVAASTVMICCFCYHGFVEDAFEVFDSTHFKD 181
           VR+++ME YGKCGE GDARR+F  MP+ DV ASTVMI  +   G VE+A  VF     KD
Sbjct: 184 VRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVFSRVRRKD 242

Query: 182 TVCWTAMIDGLVRNEEMNKALELFRKMQMENVRPNEVTVVCVLSACSQLGALELRRW 352
           TVCWTAMIDG VRNEE N+ALE FR MQ ENVRPNE T+VCVLSACSQLGALE+ RW
Sbjct: 243 TVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRW 299



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 28/70 (40%), Positives = 41/70 (58%)
 Frame = +2

Query: 131 GFVEDAFEVFDSTHFKDTVCWTAMIDGLVRNEEMNKALELFRKMQMENVRPNEVTVVCVL 310
           G +++A  VFD    +D + +  MI GL  N +  +A+ELFR M    +RP  VT V VL
Sbjct: 327 GSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVL 386

Query: 311 SACSQLGALE 340
           +ACS  G ++
Sbjct: 387 NACSHGGLVD 396


>ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At5g59200, chloroplastic; Flags: Precursor
           gi|9759241|dbj|BAB09765.1| unnamed protein product
           [Arabidopsis thaliana] gi|332009773|gb|AED97156.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 544

 Score =  157 bits (397), Expect = 9e-37
 Identities = 76/117 (64%), Positives = 90/117 (76%)
 Frame = +2

Query: 2   VRMKLMEFYGKCGEFGDARRLFGGMPKGDVAASTVMICCFCYHGFVEDAFEVFDSTHFKD 181
           V +K+ME YGK GE  +A+++F  MP  D  A+TVMI C+   GF+++A E+F     KD
Sbjct: 160 VGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKD 219

Query: 182 TVCWTAMIDGLVRNEEMNKALELFRKMQMENVRPNEVTVVCVLSACSQLGALELRRW 352
           TVCWTAMIDGLVRN+EMNKALELFR+MQMENV  NE T VCVLSACS LGALEL RW
Sbjct: 220 TVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRW 276


>ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  149 bits (376), Expect = 2e-34
 Identities = 74/119 (62%), Positives = 90/119 (75%), Gaps = 2/119 (1%)
 Frame = +2

Query: 2   VRMKLMEFYGKCGEFGDARRLFGGMPKGDVAASTVMI--CCFCYHGFVEDAFEVFDSTHF 175
           + +KL+E YGKCG   DAR++F GMP+ DV A TVMI  C  C  G VE+A EVF+    
Sbjct: 162 IALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDC--GMVEEAIEVFNEMGT 219

Query: 176 KDTVCWTAMIDGLVRNEEMNKALELFRKMQMENVRPNEVTVVCVLSACSQLGALELRRW 352
           +DTVCWT +IDGLVRN E N+ LE+FR+MQ++ V PNEVT VCVLSAC+QLGALEL RW
Sbjct: 220 RDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRW 278



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 29/71 (40%), Positives = 44/71 (61%)
 Frame = +2

Query: 131 GFVEDAFEVFDSTHFKDTVCWTAMIDGLVRNEEMNKALELFRKMQMENVRPNEVTVVCVL 310
           G +++A  +FD    KD   + +MI GL  + +  +A+ELF +M  E VRPN +T V VL
Sbjct: 306 GDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVL 365

Query: 311 SACSQLGALEL 343
           +ACS  G ++L
Sbjct: 366 NACSHGGLVDL 376