BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035503
         (244 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_567414.1| putative F-box/LRR-repeat protein [Arabidopsis ...    62   4e-08
ref|NP_001030887.1| F-box protein [Arabidopsis thaliana] gi|3326...    58   7e-07
ref|NP_191459.2| F-box protein [Arabidopsis thaliana] gi|1429892...    58   7e-07
emb|CAB86928.1| putative protein [Arabidopsis thaliana]                58   7e-07
ref|XP_003596625.1| F-box/LRR-repeat protein [Medicago truncatul...    57   1e-06

>ref|NP_567414.1| putative F-box/LRR-repeat protein [Arabidopsis thaliana]
           gi|75318094|sp|O23257.1|FBL72_ARATH RecName:
           Full=Putative F-box/LRR-repeat protein At4g13960
           gi|2244752|emb|CAB10175.1| hypothetical protein
           [Arabidopsis thaliana] gi|7268100|emb|CAB78438.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332657951|gb|AEE83351.1| putative F-box/LRR-repeat
           protein [Arabidopsis thaliana]
          Length = 434

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 36/83 (43%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
 Frame = -1

Query: 244 LTSVFSSRWRYLWTLVPNLGFCDVHLFHQNIWRNPEYE--NKFMNFVDRVLFLIDVPYIS 71
           LTS+ S RWR L+T VPNL   D    H    +   YE    FM FVDRVL L     I 
Sbjct: 26  LTSILSKRWRNLFTFVPNLDIDDSVFLHPQEGKEDRYEIQKSFMKFVDRVLALQGNSPIK 85

Query: 70  KFYLLLTKCYDEYRVNSWITTAV 2
           K  L L   +D +RV+ WI+ A+
Sbjct: 86  KLSLKLRTGFDSHRVDGWISNAL 108


>ref|NP_001030887.1| F-box protein [Arabidopsis thaliana] gi|332646338|gb|AEE79859.1|
           F-box protein [Arabidopsis thaliana]
          Length = 345

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 35/83 (42%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = -1

Query: 244 LTSVFSSRWRYLWTLVPNLGFCDVHLFHQNIWR--NPEYENKFMNFVDRVLFLIDVPYIS 71
           LTS+ S RWRYL   VPNL F D+   H    +    E    FM+FVDRVL L     I 
Sbjct: 26  LTSLLSKRWRYLIAFVPNLAFDDIVFLHPEEGKPERDEIRQSFMDFVDRVLALQAESPIK 85

Query: 70  KFYLLLTKCYDEYRVNSWITTAV 2
           KF L      D  RV+ WI+  +
Sbjct: 86  KFSLKCRIGVDSDRVDGWISNVL 108


>ref|NP_191459.2| F-box protein [Arabidopsis thaliana]
           gi|142989252|sp|Q2V3N5.2|FB211_ARATH RecName: Full=F-box
           protein At3g59000 gi|145651800|gb|ABP88125.1| At3g59000
           [Arabidopsis thaliana] gi|332646337|gb|AEE79858.1| F-box
           protein [Arabidopsis thaliana]
          Length = 491

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 35/83 (42%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = -1

Query: 244 LTSVFSSRWRYLWTLVPNLGFCDVHLFHQNIWR--NPEYENKFMNFVDRVLFLIDVPYIS 71
           LTS+ S RWRYL   VPNL F D+   H    +    E    FM+FVDRVL L     I 
Sbjct: 26  LTSLLSKRWRYLIAFVPNLAFDDIVFLHPEEGKPERDEIRQSFMDFVDRVLALQAESPIK 85

Query: 70  KFYLLLTKCYDEYRVNSWITTAV 2
           KF L      D  RV+ WI+  +
Sbjct: 86  KFSLKCRIGVDSDRVDGWISNVL 108


>emb|CAB86928.1| putative protein [Arabidopsis thaliana]
          Length = 461

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 35/83 (42%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = -1

Query: 244 LTSVFSSRWRYLWTLVPNLGFCDVHLFHQNIWR--NPEYENKFMNFVDRVLFLIDVPYIS 71
           LTS+ S RWRYL   VPNL F D+   H    +    E    FM+FVDRVL L     I 
Sbjct: 26  LTSLLSKRWRYLIAFVPNLAFDDIVFLHPEEGKPERDEIRQSFMDFVDRVLALQAESPIK 85

Query: 70  KFYLLLTKCYDEYRVNSWITTAV 2
           KF L      D  RV+ WI+  +
Sbjct: 86  KFSLKCRIGVDSDRVDGWISNVL 108


>ref|XP_003596625.1| F-box/LRR-repeat protein [Medicago truncatula]
           gi|355485673|gb|AES66876.1| F-box/LRR-repeat protein
           [Medicago truncatula]
          Length = 411

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 30/80 (37%), Positives = 43/80 (53%)
 Frame = -1

Query: 241 TSVFSSRWRYLWTLVPNLGFCDVHLFHQNIWRNPEYENKFMNFVDRVLFLIDVPYISKFY 62
           TSV S RW YLWT +  L F D+     N  R       F++FVDRVL  ++  +I  F 
Sbjct: 52  TSVLSKRWIYLWTFITKLDFDDIGYCSSNEIRKA----CFVDFVDRVLLRLNSEHIRSFS 107

Query: 61  LLLTKCYDEYRVNSWITTAV 2
           L +++ YD   +N WI+  +
Sbjct: 108 LKMSEKYDSSYINKWISIVI 127