BLASTX nr result

ID: Coptis25_contig00035493 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035493
         (353 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004161683.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic p...   125   5e-38
ref|XP_004142086.1| PREDICTED: eukaryotic peptide chain release ...   125   5e-38
ref|NP_001051012.1| Os03g0702800 [Oryza sativa Japonica Group] g...   124   1e-37
ref|XP_004140563.1| PREDICTED: eukaryotic peptide chain release ...   123   1e-37
ref|XP_002466604.1| hypothetical protein SORBIDRAFT_01g010860 [S...   122   3e-37

>ref|XP_004161683.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic peptide chain release
           factor subunit 1-3-like [Cucumis sativus]
          Length = 436

 Score =  125 bits (313), Expect(2) = 5e-38
 Identities = 55/77 (71%), Positives = 69/77 (89%)
 Frame = -2

Query: 232 LEILIDWDNLDINRYLLKNNVTGETVIKHFNKEQEANQSNFHDSATSSDFEIQDKTSLLD 53
           +EILI W+NLDINRY+LKN  TGE +IKH NKEQEANQSNF DSATS++ E+Q+K +LL+
Sbjct: 318 VEILIVWENLDINRYVLKNAATGEIIIKHLNKEQEANQSNFRDSATSAELEVQEKMALLE 377

Query: 52  WFANDFRKFGCSLEFVT 2
           WFAN+++KFGC+LEFVT
Sbjct: 378 WFANEYKKFGCTLEFVT 394



 Score = 57.8 bits (138), Expect(2) = 5e-38
 Identities = 27/38 (71%), Positives = 32/38 (84%)
 Frame = -3

Query: 351 VKFVQEMPLIGKFFEETRQITGKYVSGIDNSLKALEMG 238
           VKF+QE  LIGK+FEE  Q TGKYV G+D++LKALEMG
Sbjct: 279 VKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMG 316


>ref|XP_004142086.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like
           [Cucumis sativus]
          Length = 436

 Score =  125 bits (313), Expect(2) = 5e-38
 Identities = 55/77 (71%), Positives = 69/77 (89%)
 Frame = -2

Query: 232 LEILIDWDNLDINRYLLKNNVTGETVIKHFNKEQEANQSNFHDSATSSDFEIQDKTSLLD 53
           +EILI W+NLDINRY+LKN  TGE +IKH NKEQEANQSNF DSATS++ E+Q+K +LL+
Sbjct: 318 VEILIVWENLDINRYVLKNAATGEIIIKHLNKEQEANQSNFRDSATSAELEVQEKMALLE 377

Query: 52  WFANDFRKFGCSLEFVT 2
           WFAN+++KFGC+LEFVT
Sbjct: 378 WFANEYKKFGCTLEFVT 394



 Score = 57.8 bits (138), Expect(2) = 5e-38
 Identities = 27/38 (71%), Positives = 32/38 (84%)
 Frame = -3

Query: 351 VKFVQEMPLIGKFFEETRQITGKYVSGIDNSLKALEMG 238
           VKF+QE  LIGK+FEE  Q TGKYV G+D++LKALEMG
Sbjct: 279 VKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMG 316


>ref|NP_001051012.1| Os03g0702800 [Oryza sativa Japonica Group]
           gi|41469461|gb|AAS07262.1| eukaryotic peptide chain
           release factor subunit 1-3 (eRF1-3) [Oryza sativa
           Japonica Group] gi|62733400|gb|AAX95517.1| Putative
           peptide chain release factor subunit 1 protein [Oryza
           sativa Japonica Group] gi|108710626|gb|ABF98421.1|
           Eukaryotic peptide chain release factor subunit 1-2,
           putative, expressed [Oryza sativa Japonica Group]
           gi|113549483|dbj|BAF12926.1| Os03g0702800 [Oryza sativa
           Japonica Group] gi|125545411|gb|EAY91550.1| hypothetical
           protein OsI_13184 [Oryza sativa Indica Group]
           gi|125587621|gb|EAZ28285.1| hypothetical protein
           OsJ_12260 [Oryza sativa Japonica Group]
           gi|215768469|dbj|BAH00698.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 437

 Score =  124 bits (312), Expect(2) = 1e-37
 Identities = 53/77 (68%), Positives = 70/77 (90%)
 Frame = -2

Query: 232 LEILIDWDNLDINRYLLKNNVTGETVIKHFNKEQEANQSNFHDSATSSDFEIQDKTSLLD 53
           +E LI W+NLD+NRY+LKN+ TGET IKH NKEQEA+QSNF D++T+++ E+QDKTSLL+
Sbjct: 318 VETLIVWENLDVNRYVLKNSATGETAIKHLNKEQEADQSNFRDTSTNAELEVQDKTSLLE 377

Query: 52  WFANDFRKFGCSLEFVT 2
           WFAN+++KFGC+LEFVT
Sbjct: 378 WFANEYKKFGCTLEFVT 394



 Score = 56.6 bits (135), Expect(2) = 1e-37
 Identities = 26/38 (68%), Positives = 31/38 (81%)
 Frame = -3

Query: 351 VKFVQEMPLIGKFFEETRQITGKYVSGIDNSLKALEMG 238
           VKF+QE  LIGK+FEE  Q TGKYV G+D++LK LEMG
Sbjct: 279 VKFIQEKKLIGKYFEEISQDTGKYVFGVDDTLKTLEMG 316


>ref|XP_004140563.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like
           [Cucumis sativus] gi|449487371|ref|XP_004157593.1|
           PREDICTED: eukaryotic peptide chain release factor
           subunit 1-3-like [Cucumis sativus]
          Length = 436

 Score =  123 bits (309), Expect(2) = 1e-37
 Identities = 55/77 (71%), Positives = 68/77 (88%)
 Frame = -2

Query: 232 LEILIDWDNLDINRYLLKNNVTGETVIKHFNKEQEANQSNFHDSATSSDFEIQDKTSLLD 53
           +EILI W+NLDINRY+LKN  TGE +IKH NKEQEANQSNF D ATSS+ E+Q+K +LL+
Sbjct: 318 VEILIVWENLDINRYVLKNASTGEIIIKHLNKEQEANQSNFRDPATSSELEVQEKMALLE 377

Query: 52  WFANDFRKFGCSLEFVT 2
           WFAN+++KFGC+LEFVT
Sbjct: 378 WFANEYKKFGCTLEFVT 394



 Score = 57.8 bits (138), Expect(2) = 1e-37
 Identities = 27/38 (71%), Positives = 32/38 (84%)
 Frame = -3

Query: 351 VKFVQEMPLIGKFFEETRQITGKYVSGIDNSLKALEMG 238
           VKF+QE  LIGK+FEE  Q TGKYV G+D++LKALEMG
Sbjct: 279 VKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMG 316


>ref|XP_002466604.1| hypothetical protein SORBIDRAFT_01g010860 [Sorghum bicolor]
           gi|241920458|gb|EER93602.1| hypothetical protein
           SORBIDRAFT_01g010860 [Sorghum bicolor]
          Length = 437

 Score =  122 bits (305), Expect(2) = 3e-37
 Identities = 52/77 (67%), Positives = 70/77 (90%)
 Frame = -2

Query: 232 LEILIDWDNLDINRYLLKNNVTGETVIKHFNKEQEANQSNFHDSATSSDFEIQDKTSLLD 53
           +E LI W+NLD+NRY+LKN+ TGETVIKH NKEQEA+QS+F D +T+++ E+Q+KTSLL+
Sbjct: 318 VETLIVWENLDVNRYVLKNSATGETVIKHLNKEQEADQSHFRDPSTNAELEVQEKTSLLE 377

Query: 52  WFANDFRKFGCSLEFVT 2
           WFAN+++KFGC+LEFVT
Sbjct: 378 WFANEYKKFGCTLEFVT 394



 Score = 58.2 bits (139), Expect(2) = 3e-37
 Identities = 27/38 (71%), Positives = 32/38 (84%)
 Frame = -3

Query: 351 VKFVQEMPLIGKFFEETRQITGKYVSGIDNSLKALEMG 238
           VKF+QE  LIGK+FEE  Q TGKYV G+D++LKALEMG
Sbjct: 279 VKFIQEKKLIGKYFEEISQDTGKYVFGVDDTLKALEMG 316


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