BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035454
         (325 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containi...   116   2e-24
emb|CBI35295.3| unnamed protein product [Vitis vinifera]              101   6e-20
ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containi...   101   6e-20
emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]   101   6e-20
ref|XP_002890108.1| pentatricopeptide repeat-containing protein ...    97   1e-18

>ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
           gi|297737690|emb|CBI26891.3| unnamed protein product
           [Vitis vinifera]
          Length = 610

 Score =  116 bits (290), Expect = 2e-24
 Identities = 56/106 (52%), Positives = 73/106 (68%)
 Frame = -1

Query: 325 VYEHMVKVGVRPDKFTFPFVLKGCGCLEEILVGEEVHVHVIKFGVELDVIVRTELMSFYA 146
           VY  M  +GVRPD FTFPFV+K C  L E+  G  +H HV+K G+E    VRTELM  Y 
Sbjct: 122 VYGKMRHLGVRPDPFTFPFVIKACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYV 181

Query: 145 KFGEVASADYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQM 8
           KFGE+  A++LF SMV RDLV W+AL++   Q G++ KA++ FR+M
Sbjct: 182 KFGELGCAEFLFGSMVERDLVAWNALIAVCVQTGFSSKALQSFREM 227



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 32/106 (30%), Positives = 58/106 (54%)
 Frame = -1

Query: 322 YEHMVKVGVRPDKFTFPFVLKGCGCLEEILVGEEVHVHVIKFGVELDVIVRTELMSFYAK 143
           +  M   G++PD  T    L  CG L  +  GEE++    + G++ ++IV    +   AK
Sbjct: 224 FREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAK 283

Query: 142 FGEVASADYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQME 5
            G++  A  LF+ M  R+++ WS ++  YA  G ++KA+ +F +M+
Sbjct: 284 CGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMK 329


>emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  101 bits (252), Expect = 6e-20
 Identities = 49/107 (45%), Positives = 70/107 (65%)
 Frame = -1

Query: 325 VYEHMVKVGVRPDKFTFPFVLKGCGCLEEILVGEEVHVHVIKFGVELDVIVRTELMSFYA 146
           +Y  M+ +GVRP+K+T+PFVLK C  L  I  G E+H H   FG+E DV V T L+ FYA
Sbjct: 96  LYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYA 155

Query: 145 KFGEVASADYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQME 5
           K G +  A  LF SM +RD+V W+A+++  + YG  D A+++  QM+
Sbjct: 156 KCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQ 202


>ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  101 bits (252), Expect = 6e-20
 Identities = 49/107 (45%), Positives = 70/107 (65%)
 Frame = -1

Query: 325 VYEHMVKVGVRPDKFTFPFVLKGCGCLEEILVGEEVHVHVIKFGVELDVIVRTELMSFYA 146
           +Y  M+ +GVRP+K+T+PFVLK C  L  I  G E+H H   FG+E DV V T L+ FYA
Sbjct: 96  LYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYA 155

Query: 145 KFGEVASADYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQME 5
           K G +  A  LF SM +RD+V W+A+++  + YG  D A+++  QM+
Sbjct: 156 KCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQ 202



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 35/104 (33%), Positives = 59/104 (56%)
 Frame = -1

Query: 313 MVKVGVRPDKFTFPFVLKGCGCLEEILVGEEVHVHVIKFGVELDVIVRTELMSFYAKFGE 134
           ++K  + P   T   VL+ C  L ++  G ++H ++IK G  LD+++   L+S YAK G 
Sbjct: 303 ILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGV 362

Query: 133 VASADYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQMEV 2
           +  A   F+ M  +D V +SA++S   Q G A  A+ +FR M++
Sbjct: 363 IDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQL 406


>emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  101 bits (252), Expect = 6e-20
 Identities = 49/107 (45%), Positives = 70/107 (65%)
 Frame = -1

Query: 325 VYEHMVKVGVRPDKFTFPFVLKGCGCLEEILVGEEVHVHVIKFGVELDVIVRTELMSFYA 146
           +Y  M+ +GVRP+K+T+PFVLK C  L  I  G E+H H   FG+E DV V T L+ FYA
Sbjct: 96  LYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYA 155

Query: 145 KFGEVASADYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQME 5
           K G +  A  LF SM +RD+V W+A+++  + YG  D A+++  QM+
Sbjct: 156 KCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQ 202



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 35/104 (33%), Positives = 59/104 (56%)
 Frame = -1

Query: 313 MVKVGVRPDKFTFPFVLKGCGCLEEILVGEEVHVHVIKFGVELDVIVRTELMSFYAKFGE 134
           ++K  + P   T   VL+ C  L ++  G ++H ++IK G  LD+++   L+S YAK G 
Sbjct: 303 ILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGV 362

Query: 133 VASADYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQMEV 2
           +  A   F+ M  +D V +SA++S   Q G A  A+ +FR M++
Sbjct: 363 IDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQL 406


>ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297335950|gb|EFH66367.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 866

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 46/107 (42%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
 Frame = -1

Query: 325 VYEHMVKVG-VRPDKFTFPFVLKGCGCLEEILVGEEVHVHVIKFGVELDVIVRTELMSFY 149
           +Y  M+ VG V+PD +TFP VL+ CG + ++  G EVHVHV+++G ELD+ V   L++ Y
Sbjct: 182 LYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMY 241

Query: 148 AKFGEVASADYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQM 8
            K G+V SA  LF+ M  RD++ W+A++S Y + G   + +K+F  M
Sbjct: 242 VKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAM 288



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 31/100 (31%), Positives = 49/100 (49%)
 Frame = -1

Query: 304 VGVRPDKFTFPFVLKGCGCLEEILVGEEVHVHVIKFGVELDVIVRTELMSFYAKFGEVAS 125
           + V PD  T   V+  C  L +  +G ++H +VI  G  +D+ V   L   Y   G    
Sbjct: 291 LSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWRE 350

Query: 124 ADYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQME 5
           A+ LF  M  +D+V W+ ++S Y      +KAI  +R M+
Sbjct: 351 AEKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMD 390



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 27/106 (25%), Positives = 56/106 (52%)
 Frame = -1

Query: 325 VYEHMVKVGVRPDKFTFPFVLKGCGCLEEILVGEEVHVHVIKFGVELDVIVRTELMSFYA 146
           ++   +K+ ++P+  T    L  C  +  ++ G+E+H HV++ GV LD  +   L+  Y 
Sbjct: 485 IFFRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYV 544

Query: 145 KFGEVASADYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQM 8
           + G +  A   F S   +D+  W+ L++ Y++ G     +++F +M
Sbjct: 545 RCGRMNIAWNQFNSQ-KKDVSSWNILLTGYSERGQGSVVVELFDRM 589