BLASTX nr result
ID: Coptis25_contig00035441
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00035441 (290 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_563788.1| pre-mRNA-splicing factor RBM22/SLT11 [Arabidops... 61 1e-07 ref|NP_001059374.1| Os07g0281000 [Oryza sativa Japonica Group] g... 61 1e-07 ref|NP_001056931.1| Os06g0170500 [Oryza sativa Japonica Group] g... 61 1e-07 gb|AFW85648.1| pre-mRNA-splicing factor SLT11 [Zea mays] 61 1e-07 ref|XP_003564252.1| PREDICTED: zinc finger CCCH domain-containin... 61 1e-07 >ref|NP_563788.1| pre-mRNA-splicing factor RBM22/SLT11 [Arabidopsis thaliana] gi|75335266|sp|Q9LNV5.1|C3H4_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 4; Short=AtC3H4 gi|8778549|gb|AAF79557.1|AC022464_15 F22G5.30 [Arabidopsis thaliana] gi|332189993|gb|AEE28114.1| pre-mRNA-splicing factor RBM22/SLT11 [Arabidopsis thaliana] Length = 481 Score = 60.8 bits (146), Expect = 1e-07 Identities = 26/43 (60%), Positives = 31/43 (72%), Gaps = 2/43 (4%) Frame = +2 Query: 56 DKECKICSKPFDVAGWEAKREVR--KTVICYPCCKLQNVCQLC 178 DKECKIC++PF V W R+ R KT IC CCKL+NVCQ+C Sbjct: 41 DKECKICTRPFTVFRWRPGRDARYKKTEICQTCCKLKNVCQVC 83 >ref|NP_001059374.1| Os07g0281000 [Oryza sativa Japonica Group] gi|75325391|sp|Q6Z358.1|C3H49_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 49; Short=OsC3H49 gi|34394813|dbj|BAC84225.1| RRM-containing RNA-binding protein-like [Oryza sativa Japonica Group] gi|113610910|dbj|BAF21288.1| Os07g0281000 [Oryza sativa Japonica Group] gi|222636833|gb|EEE66965.1| hypothetical protein OsJ_23846 [Oryza sativa Japonica Group] Length = 486 Score = 60.8 bits (146), Expect = 1e-07 Identities = 26/43 (60%), Positives = 31/43 (72%), Gaps = 2/43 (4%) Frame = +2 Query: 56 DKECKICSKPFDVAGWEAKREVR--KTVICYPCCKLQNVCQLC 178 DKECKIC++PF V W R+ R KT IC CCKL+NVCQ+C Sbjct: 41 DKECKICARPFTVFRWRPGRDARYKKTEICQTCCKLKNVCQVC 83 >ref|NP_001056931.1| Os06g0170500 [Oryza sativa Japonica Group] gi|75321585|sp|Q5SNN4.1|C3H40_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 40; Short=OsC3H40 gi|55773636|dbj|BAD72175.1| RRM-containing RNA-binding protein-like [Oryza sativa Japonica Group] gi|113594971|dbj|BAF18845.1| Os06g0170500 [Oryza sativa Japonica Group] gi|125596196|gb|EAZ35976.1| hypothetical protein OsJ_20278 [Oryza sativa Japonica Group] gi|215767752|dbj|BAG99980.1| unnamed protein product [Oryza sativa Japonica Group] Length = 482 Score = 60.8 bits (146), Expect = 1e-07 Identities = 26/43 (60%), Positives = 31/43 (72%), Gaps = 2/43 (4%) Frame = +2 Query: 56 DKECKICSKPFDVAGWEAKREVR--KTVICYPCCKLQNVCQLC 178 DKECKIC++PF V W R+ R KT IC CCKL+NVCQ+C Sbjct: 41 DKECKICARPFTVFRWRPGRDARYKKTEICQTCCKLKNVCQVC 83 >gb|AFW85648.1| pre-mRNA-splicing factor SLT11 [Zea mays] Length = 493 Score = 60.8 bits (146), Expect = 1e-07 Identities = 26/43 (60%), Positives = 31/43 (72%), Gaps = 2/43 (4%) Frame = +2 Query: 56 DKECKICSKPFDVAGWEAKREVR--KTVICYPCCKLQNVCQLC 178 DKECKIC++PF V W R+ R KT IC CCKL+NVCQ+C Sbjct: 41 DKECKICARPFTVFRWRPGRDARYKKTEICQTCCKLKNVCQVC 83 >ref|XP_003564252.1| PREDICTED: zinc finger CCCH domain-containing protein 49-like [Brachypodium distachyon] Length = 488 Score = 60.8 bits (146), Expect = 1e-07 Identities = 26/43 (60%), Positives = 31/43 (72%), Gaps = 2/43 (4%) Frame = +2 Query: 56 DKECKICSKPFDVAGWEAKREVR--KTVICYPCCKLQNVCQLC 178 DKECKIC++PF V W R+ R KT IC CCKL+NVCQ+C Sbjct: 41 DKECKICARPFTVFRWRPGRDARYKKTEICQTCCKLKNVCQVC 83