BLASTX nr result
ID: Coptis25_contig00035428
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00035428
(371 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containi... 152 2e-35
dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare] 146 2e-33
ref|XP_002315895.1| predicted protein [Populus trichocarpa] gi|2... 145 3e-33
ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containi... 144 1e-32
gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indi... 139 3e-31
>ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial [Vitis vinifera]
Length = 531
Score = 152 bits (385), Expect = 2e-35
Identities = 75/123 (60%), Positives = 86/123 (69%)
Frame = +2
Query: 2 AYRVFQEMESNFGCEPSANTYEIIVRMFCSEESVDMALQVWNQMKAKGILPSMHMFSSLI 181
AYRVFQ M S GCEPS +TYEI+VRMFC+EE VDMAL+VW++MKAKG+LP MHMFS+LI
Sbjct: 408 AYRVFQGMSSEPGCEPSVSTYEIVVRMFCNEERVDMALRVWDEMKAKGVLPGMHMFSTLI 467
Query: 182 NGLSRDNKLDEACAYFQEMLDSGIRPPGPLFGNXXXXXXXXXXXXXXXSFGLKLDKIRKT 361
N L +NKLDEAC YF EMLD GIRPP +F N KLDKIR T
Sbjct: 468 NSLCYENKLDEACKYFHEMLDMGIRPPAAMFSNLKQTLLDEGKQDMVLILAQKLDKIRTT 527
Query: 362 RQI 370
+ I
Sbjct: 528 QVI 530
Score = 65.1 bits (157), Expect = 6e-09
Identities = 30/88 (34%), Positives = 52/88 (59%)
Frame = +2
Query: 11 VFQEMESNFGCEPSANTYEIIVRMFCSEESVDMALQVWNQMKAKGILPSMHMFSSLINGL 190
V++EM+ G EP A TY I++ C D A++++++M+A +P+ H++ +LINGL
Sbjct: 271 VYREMKDE-GFEPDAVTYGILINAHCKARRYDAAVELFHKMEANKCMPTPHIYCTLINGL 329
Query: 191 SRDNKLDEACAYFQEMLDSGIRPPGPLF 274
+ +L EA +F+ SG P P +
Sbjct: 330 GSERRLTEALQFFERSKASGFTPEAPTY 357
>dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 565
Score = 146 bits (368), Expect = 2e-33
Identities = 72/120 (60%), Positives = 84/120 (70%)
Frame = +2
Query: 2 AYRVFQEMESNFGCEPSANTYEIIVRMFCSEESVDMALQVWNQMKAKGILPSMHMFSSLI 181
AY VFQ M + GCEP NTY ++V MFCS E VD+AL+VWNQMK KG+LP MHMFS+LI
Sbjct: 443 AYNVFQGMSKD-GCEPQLNTYTMMVGMFCSNERVDVALKVWNQMKEKGVLPCMHMFSALI 501
Query: 182 NGLSRDNKLDEACAYFQEMLDSGIRPPGPLFGNXXXXXXXXXXXXXXXSFGLKLDKIRKT 361
NGL +N+L+EACAYFQEMLD GIRPPG LF N LKLD++RKT
Sbjct: 502 NGLCFENRLEEACAYFQEMLDRGIRPPGQLFSNLKEALIEGGRISLAQEMALKLDELRKT 561
Score = 62.4 bits (150), Expect = 4e-08
Identities = 30/80 (37%), Positives = 47/80 (58%)
Frame = +2
Query: 11 VFQEMESNFGCEPSANTYEIIVRMFCSEESVDMALQVWNQMKAKGILPSMHMFSSLINGL 190
V+QEM + G +P Y +++ FC D A++V+ +M+ G +PS H++ LINGL
Sbjct: 306 VYQEM-LDAGLQPDVVAYGMLISSFCKSGKCDEAIKVFREMETNGCMPSPHVYCMLINGL 364
Query: 191 SRDNKLDEACAYFQEMLDSG 250
+ +LDEA YF+ SG
Sbjct: 365 GSEERLDEALKYFELSKASG 384
>ref|XP_002315895.1| predicted protein [Populus trichocarpa] gi|222864935|gb|EEF02066.1|
predicted protein [Populus trichocarpa]
Length = 424
Score = 145 bits (367), Expect = 3e-33
Identities = 73/119 (61%), Positives = 85/119 (71%)
Frame = +2
Query: 2 AYRVFQEMESNFGCEPSANTYEIIVRMFCSEESVDMALQVWNQMKAKGILPSMHMFSSLI 181
AY VFQ+M GC+PS +TYEIIVRMFC+E+ VDMA++VW+QMKAKGILP MHMFS+LI
Sbjct: 302 AYSVFQKMSCE-GCQPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGILPVMHMFSTLI 360
Query: 182 NGLSRDNKLDEACAYFQEMLDSGIRPPGPLFGNXXXXXXXXXXXXXXXSFGLKLDKIRK 358
N L ++KLDEAC YFQEMLD GIRPP LF N F KLDK+RK
Sbjct: 361 NSLCHESKLDEACMYFQEMLDVGIRPPAQLFSNLKQNLLDEGKKDTVVVFERKLDKLRK 419
Score = 64.3 bits (155), Expect = 1e-08
Identities = 31/88 (35%), Positives = 50/88 (56%)
Frame = +2
Query: 11 VFQEMESNFGCEPSANTYEIIVRMFCSEESVDMALQVWNQMKAKGILPSMHMFSSLINGL 190
V+ EM+ G EP TY I++ C D A++++++M+AK PS H++ +LINGL
Sbjct: 165 VYNEMKDE-GFEPDVVTYGILINAHCKSRRYDDAIELFHEMEAKNCKPSPHIYCTLINGL 223
Query: 191 SRDNKLDEACAYFQEMLDSGIRPPGPLF 274
+ +L EA +F+ SG P P +
Sbjct: 224 GAEKRLSEALEFFELSKASGFVPEAPTY 251
>ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Brachypodium distachyon]
Length = 547
Score = 144 bits (362), Expect = 1e-32
Identities = 72/120 (60%), Positives = 80/120 (66%)
Frame = +2
Query: 2 AYRVFQEMESNFGCEPSANTYEIIVRMFCSEESVDMALQVWNQMKAKGILPSMHMFSSLI 181
AY VFQ M GCEP NTY ++V MFCS E VDMAL+VW QMK KG+LP MHMFSSLI
Sbjct: 425 AYNVFQRMGME-GCEPQLNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSSLI 483
Query: 182 NGLSRDNKLDEACAYFQEMLDSGIRPPGPLFGNXXXXXXXXXXXXXXXSFGLKLDKIRKT 361
NGL +N+L+EAC YFQEMLD GIRPPG LF N LKLD +RKT
Sbjct: 484 NGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALIEGGRISLAQDMALKLDTLRKT 543
Score = 62.8 bits (151), Expect = 3e-08
Identities = 31/80 (38%), Positives = 47/80 (58%)
Frame = +2
Query: 11 VFQEMESNFGCEPSANTYEIIVRMFCSEESVDMALQVWNQMKAKGILPSMHMFSSLINGL 190
V+QEM + G +P Y ++ FC D A++V+ +M+A G +PS H++ LINGL
Sbjct: 288 VYQEM-LDAGIKPDVVAYGTLISSFCKSGKCDEAIKVFREMEANGCMPSPHVYCMLINGL 346
Query: 191 SRDNKLDEACAYFQEMLDSG 250
+ +LDEA YF+ SG
Sbjct: 347 GSEERLDEALKYFELSKASG 366
>gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
Length = 540
Score = 139 bits (349), Expect = 3e-31
Identities = 68/120 (56%), Positives = 81/120 (67%)
Frame = +2
Query: 2 AYRVFQEMESNFGCEPSANTYEIIVRMFCSEESVDMALQVWNQMKAKGILPSMHMFSSLI 181
AY +FQ ME + GCEP NTY ++V MFCS E VDMAL+VW QMK KG+LP MHMFS+LI
Sbjct: 418 AYNLFQRMERD-GCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALI 476
Query: 182 NGLSRDNKLDEACAYFQEMLDSGIRPPGPLFGNXXXXXXXXXXXXXXXSFGLKLDKIRKT 361
NGL DN+L+EAC YFQEMLD GIRPPG LF N +L+ +R+T
Sbjct: 477 NGLCFDNRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVEGGRITLAQEVTQRLEMLRRT 536
Score = 62.8 bits (151), Expect = 3e-08
Identities = 31/80 (38%), Positives = 48/80 (60%)
Frame = +2
Query: 11 VFQEMESNFGCEPSANTYEIIVRMFCSEESVDMALQVWNQMKAKGILPSMHMFSSLINGL 190
V+QEM + G +P Y +++ FC D A++V+++M+ G +PS H++ LINGL
Sbjct: 281 VYQEM-LDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGL 339
Query: 191 SRDNKLDEACAYFQEMLDSG 250
+LDEA YFQ +SG
Sbjct: 340 GSMERLDEALKYFQLSKESG 359