BLASTX nr result

ID: Coptis25_contig00035421 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035421
         (241 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002873083.1| hypothetical protein ARALYDRAFT_487095 [Arab...   104   3e-25
gb|EEH20847.1| ubiquitin [Paracoccidioides brasiliensis Pb03]         104   5e-25
gb|ABC94632.1| ubiquitin C [Ictalurus punctatus]                      101   5e-25
gb|ABI53722.1| polyubiquitin [Pyropia yezoensis]                      103   6e-25
gb|EKX44830.1| ubiquitin [Guillardia theta CCMP2712]                  102   6e-25

>ref|XP_002873083.1| hypothetical protein ARALYDRAFT_487095 [Arabidopsis lyrata subsp.
           lyrata] gi|297318920|gb|EFH49342.1| hypothetical protein
           ARALYDRAFT_487095 [Arabidopsis lyrata subsp. lyrata]
          Length = 306

 Score =  104 bits (260), Expect(2) = 3e-25
 Identities = 54/60 (90%), Positives = 54/60 (90%), Gaps = 1/60 (1%)
 Frame = +3

Query: 3   PPDQQRLIFIGKQFEDGRTLTDYTIQKESTLH-VLRLHGGMQIFAKTLTGKTITLEVESS 179
           PPDQQRLIF GKQ EDGRTLTDY IQKESTLH VLRL GGMQIF KTLTGKTITLEVESS
Sbjct: 37  PPDQQRLIFAGKQLEDGRTLTDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESS 96



 Score = 35.4 bits (80), Expect(2) = 3e-25
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +1

Query: 181 TIGIVKVKIQDEEGIPPDQQ 240
           TI  VK KIQD+EGIPPDQQ
Sbjct: 98  TIDNVKAKIQDKEGIPPDQQ 117



 Score =  102 bits (255), Expect(2) = 1e-24
 Identities = 53/60 (88%), Positives = 53/60 (88%), Gaps = 1/60 (1%)
 Frame = +3

Query: 3   PPDQQRLIFIGKQFEDGRTLTDYTIQKESTLH-VLRLHGGMQIFAKTLTGKTITLEVESS 179
           PPDQQRLIF GKQ EDGRTL DY IQKESTLH VLRL GGMQIF KTLTGKTITLEVESS
Sbjct: 113 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESS 172



 Score =  102 bits (255), Expect(2) = 1e-24
 Identities = 53/60 (88%), Positives = 53/60 (88%), Gaps = 1/60 (1%)
 Frame = +3

Query: 3   PPDQQRLIFIGKQFEDGRTLTDYTIQKESTLH-VLRLHGGMQIFAKTLTGKTITLEVESS 179
           PPDQQRLIF GKQ EDGRTL DY IQKESTLH VLRL GGMQIF KTLTGKTITLEVESS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESS 248



 Score = 35.4 bits (80), Expect(2) = 1e-24
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +1

Query: 181 TIGIVKVKIQDEEGIPPDQQ 240
           TI  VK KIQD+EGIPPDQQ
Sbjct: 174 TIDNVKAKIQDKEGIPPDQQ 193



 Score = 35.4 bits (80), Expect(2) = 1e-24
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +1

Query: 181 TIGIVKVKIQDEEGIPPDQQ 240
           TI  VK KIQD+EGIPPDQQ
Sbjct: 250 TIDNVKAKIQDKEGIPPDQQ 269



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 34/40 (85%), Positives = 34/40 (85%), Gaps = 1/40 (2%)
 Frame = +3

Query: 3   PPDQQRLIFIGKQFEDGRTLTDYTIQKESTLH-VLRLHGG 119
           PPDQQRLIF GKQ EDGRTL DY IQKESTLH VLRL GG
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304



 Score = 39.3 bits (90), Expect(2) = 6e-06
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +3

Query: 120 MQIFAKTLTGKTITLEVESS 179
           MQIF KTLTGKTITLEVESS
Sbjct: 1   MQIFVKTLTGKTITLEVESS 20



 Score = 35.4 bits (80), Expect(2) = 6e-06
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +1

Query: 181 TIGIVKVKIQDEEGIPPDQQ 240
           TI  VK KIQD+EGIPPDQQ
Sbjct: 22  TIDNVKAKIQDKEGIPPDQQ 41


>gb|EEH20847.1| ubiquitin [Paracoccidioides brasiliensis Pb03]
          Length = 305

 Score =  104 bits (260), Expect(2) = 5e-25
 Identities = 54/60 (90%), Positives = 54/60 (90%), Gaps = 1/60 (1%)
 Frame = +3

Query: 3   PPDQQRLIFIGKQFEDGRTLTDYTIQKESTLH-VLRLHGGMQIFAKTLTGKTITLEVESS 179
           PPDQQRLIF GKQ EDGRTLTDY IQKESTLH VLRL GGMQIF KTLTGKTITLEVESS
Sbjct: 37  PPDQQRLIFAGKQLEDGRTLTDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESS 96



 Score = 34.7 bits (78), Expect(2) = 5e-25
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +1

Query: 181 TIGIVKVKIQDEEGIPPDQQ 240
           TI  VK KIQD+EGIPPDQQ
Sbjct: 98  TIDNVKSKIQDKEGIPPDQQ 117



 Score =  103 bits (256), Expect(2) = 1e-24
 Identities = 53/60 (88%), Positives = 54/60 (90%), Gaps = 1/60 (1%)
 Frame = +3

Query: 3   PPDQQRLIFIGKQFEDGRTLTDYTIQKESTLH-VLRLHGGMQIFAKTLTGKTITLEVESS 179
           PPDQQRLIF GKQ EDGRTL+DY IQKESTLH VLRL GGMQIF KTLTGKTITLEVESS
Sbjct: 113 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESS 172



 Score =  103 bits (256), Expect(2) = 1e-24
 Identities = 53/60 (88%), Positives = 54/60 (90%), Gaps = 1/60 (1%)
 Frame = +3

Query: 3   PPDQQRLIFIGKQFEDGRTLTDYTIQKESTLH-VLRLHGGMQIFAKTLTGKTITLEVESS 179
           PPDQQRLIF GKQ EDGRTL+DY IQKESTLH VLRL GGMQIF KTLTGKTITLEVESS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESS 248



 Score = 34.7 bits (78), Expect(2) = 1e-24
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +1

Query: 181 TIGIVKVKIQDEEGIPPDQQ 240
           TI  VK KIQD+EGIPPDQQ
Sbjct: 174 TIDNVKSKIQDKEGIPPDQQ 193



 Score = 34.7 bits (78), Expect(2) = 1e-24
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +1

Query: 181 TIGIVKVKIQDEEGIPPDQQ 240
           TI  VK KIQD+EGIPPDQQ
Sbjct: 250 TIDNVKSKIQDKEGIPPDQQ 269



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 34/40 (85%), Positives = 35/40 (87%), Gaps = 1/40 (2%)
 Frame = +3

Query: 3   PPDQQRLIFIGKQFEDGRTLTDYTIQKESTLH-VLRLHGG 119
           PPDQQRLIF GKQ EDGRTL+DY IQKESTLH VLRL GG
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304


>gb|ABC94632.1| ubiquitin C [Ictalurus punctatus]
          Length = 192

 Score =  101 bits (251), Expect(2) = 5e-25
 Identities = 52/60 (86%), Positives = 53/60 (88%), Gaps = 1/60 (1%)
 Frame = +3

Query: 3   PPDQQRLIFIGKQFEDGRTLTDYTIQKESTLH-VLRLHGGMQIFAKTLTGKTITLEVESS 179
           PPDQQRLIF GKQ EDGRTL+DY IQKESTLH VLRL GGMQIF KTLTGKTITLEVE S
Sbjct: 76  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 135



 Score = 38.1 bits (87), Expect(2) = 5e-25
 Identities = 17/20 (85%), Positives = 18/20 (90%)
 Frame = +1

Query: 181 TIGIVKVKIQDEEGIPPDQQ 240
           TIG VK KIQD+EGIPPDQQ
Sbjct: 137 TIGNVKAKIQDKEGIPPDQQ 156



 Score = 98.6 bits (244), Expect(2) = 3e-23
 Identities = 51/59 (86%), Positives = 52/59 (88%), Gaps = 1/59 (1%)
 Frame = +3

Query: 6   PDQQRLIFIGKQFEDGRTLTDYTIQKESTLH-VLRLHGGMQIFAKTLTGKTITLEVESS 179
           PDQQRLIF GKQ EDGRTL+DY IQKESTLH VLRL GGMQIF KTLTGKTITLEVE S
Sbjct: 1   PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 59



 Score = 35.0 bits (79), Expect(2) = 3e-23
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +1

Query: 181 TIGIVKVKIQDEEGIPPDQQ 240
           TI  VK KIQD+EGIPPDQQ
Sbjct: 61  TIENVKAKIQDKEGIPPDQQ 80



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 34/40 (85%), Positives = 35/40 (87%), Gaps = 1/40 (2%)
 Frame = +3

Query: 3   PPDQQRLIFIGKQFEDGRTLTDYTIQKESTLH-VLRLHGG 119
           PPDQQRLIF GKQ EDGRTL+DY IQKESTLH VLRL GG
Sbjct: 152 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 191


>gb|ABI53722.1| polyubiquitin [Pyropia yezoensis]
          Length = 533

 Score =  103 bits (256), Expect(2) = 6e-25
 Identities = 53/60 (88%), Positives = 54/60 (90%), Gaps = 1/60 (1%)
 Frame = +3

Query: 3   PPDQQRLIFIGKQFEDGRTLTDYTIQKESTLH-VLRLHGGMQIFAKTLTGKTITLEVESS 179
           PPDQQRLIF GKQ EDGRTL+DY IQKESTLH VLRL GGMQIF KTLTGKTITLEVESS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESS 248



 Score = 35.8 bits (81), Expect(2) = 6e-25
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +1

Query: 181 TIGIVKVKIQDEEGIPPDQQ 240
           TI  VK+KIQD+EGIPPDQQ
Sbjct: 250 TIDNVKLKIQDKEGIPPDQQ 269



 Score =  103 bits (256), Expect(2) = 1e-24
 Identities = 53/60 (88%), Positives = 54/60 (90%), Gaps = 1/60 (1%)
 Frame = +3

Query: 3   PPDQQRLIFIGKQFEDGRTLTDYTIQKESTLH-VLRLHGGMQIFAKTLTGKTITLEVESS 179
           PPDQQRLIF GKQ EDGRTL+DY IQKESTLH VLRL GGMQIF KTLTGKTITLEVESS
Sbjct: 37  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESS 96



 Score =  103 bits (256), Expect(2) = 1e-24
 Identities = 53/60 (88%), Positives = 54/60 (90%), Gaps = 1/60 (1%)
 Frame = +3

Query: 3   PPDQQRLIFIGKQFEDGRTLTDYTIQKESTLH-VLRLHGGMQIFAKTLTGKTITLEVESS 179
           PPDQQRLIF GKQ EDGRTL+DY IQKESTLH VLRL GGMQIF KTLTGKTITLEVESS
Sbjct: 113 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESS 172



 Score =  103 bits (256), Expect(2) = 1e-24
 Identities = 53/60 (88%), Positives = 54/60 (90%), Gaps = 1/60 (1%)
 Frame = +3

Query: 3   PPDQQRLIFIGKQFEDGRTLTDYTIQKESTLH-VLRLHGGMQIFAKTLTGKTITLEVESS 179
           PPDQQRLIF GKQ EDGRTL+DY IQKESTLH VLRL GGMQIF KTLTGKTITLEVESS
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESS 324



 Score =  103 bits (256), Expect(2) = 1e-24
 Identities = 53/60 (88%), Positives = 54/60 (90%), Gaps = 1/60 (1%)
 Frame = +3

Query: 3   PPDQQRLIFIGKQFEDGRTLTDYTIQKESTLH-VLRLHGGMQIFAKTLTGKTITLEVESS 179
           PPDQQRLIF GKQ EDGRTL+DY IQKESTLH VLRL GGMQIF KTLTGKTITLEVESS
Sbjct: 341 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESS 400



 Score =  103 bits (256), Expect(2) = 1e-24
 Identities = 53/60 (88%), Positives = 54/60 (90%), Gaps = 1/60 (1%)
 Frame = +3

Query: 3   PPDQQRLIFIGKQFEDGRTLTDYTIQKESTLH-VLRLHGGMQIFAKTLTGKTITLEVESS 179
           PPDQQRLIF GKQ EDGRTL+DY IQKESTLH VLRL GGMQIF KTLTGKTITLEVESS
Sbjct: 417 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESS 476



 Score = 34.7 bits (78), Expect(2) = 1e-24
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +1

Query: 181 TIGIVKVKIQDEEGIPPDQQ 240
           TI  VK KIQD+EGIPPDQQ
Sbjct: 98  TIDNVKSKIQDKEGIPPDQQ 117



 Score = 34.7 bits (78), Expect(2) = 1e-24
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +1

Query: 181 TIGIVKVKIQDEEGIPPDQQ 240
           TI  VK KIQD+EGIPPDQQ
Sbjct: 174 TIDNVKSKIQDKEGIPPDQQ 193



 Score = 34.7 bits (78), Expect(2) = 1e-24
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +1

Query: 181 TIGIVKVKIQDEEGIPPDQQ 240
           TI  VK KIQD+EGIPPDQQ
Sbjct: 326 TIDNVKSKIQDKEGIPPDQQ 345



 Score = 34.7 bits (78), Expect(2) = 1e-24
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +1

Query: 181 TIGIVKVKIQDEEGIPPDQQ 240
           TI  VK KIQD+EGIPPDQQ
Sbjct: 402 TIDNVKSKIQDKEGIPPDQQ 421



 Score = 34.7 bits (78), Expect(2) = 1e-24
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +1

Query: 181 TIGIVKVKIQDEEGIPPDQQ 240
           TI  VK KIQD+EGIPPDQQ
Sbjct: 478 TIDNVKSKIQDKEGIPPDQQ 497



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 35/41 (85%), Positives = 36/41 (87%), Gaps = 1/41 (2%)
 Frame = +3

Query: 3   PPDQQRLIFIGKQFEDGRTLTDYTIQKESTLH-VLRLHGGM 122
           PPDQQRLIF GKQ EDGRTL+DY IQKESTLH VLRL GGM
Sbjct: 493 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 533


>gb|EKX44830.1| ubiquitin [Guillardia theta CCMP2712]
          Length = 229

 Score =  102 bits (255), Expect(2) = 6e-25
 Identities = 53/60 (88%), Positives = 53/60 (88%), Gaps = 1/60 (1%)
 Frame = +3

Query: 3   PPDQQRLIFIGKQFEDGRTLTDYTIQKESTLH-VLRLHGGMQIFAKTLTGKTITLEVESS 179
           PPDQQRLIF GKQ EDGRTL DY IQKESTLH VLRL GGMQIF KTLTGKTITLEVESS
Sbjct: 37  PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESS 96



 Score =  102 bits (255), Expect(2) = 6e-25
 Identities = 53/60 (88%), Positives = 53/60 (88%), Gaps = 1/60 (1%)
 Frame = +3

Query: 3   PPDQQRLIFIGKQFEDGRTLTDYTIQKESTLH-VLRLHGGMQIFAKTLTGKTITLEVESS 179
           PPDQQRLIF GKQ EDGRTL DY IQKESTLH VLRL GGMQIF KTLTGKTITLEVESS
Sbjct: 113 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESS 172



 Score = 36.2 bits (82), Expect(2) = 6e-25
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +1

Query: 181 TIGIVKVKIQDEEGIPPDQQ 240
           TI +VK KIQD+EGIPPDQQ
Sbjct: 98  TIDMVKSKIQDKEGIPPDQQ 117



 Score = 36.2 bits (82), Expect(2) = 6e-25
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +1

Query: 181 TIGIVKVKIQDEEGIPPDQQ 240
           TI +VK KIQD+EGIPPDQQ
Sbjct: 174 TIDMVKSKIQDKEGIPPDQQ 193



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 34/40 (85%), Positives = 34/40 (85%), Gaps = 1/40 (2%)
 Frame = +3

Query: 3   PPDQQRLIFIGKQFEDGRTLTDYTIQKESTLH-VLRLHGG 119
           PPDQQRLIF GKQ EDGRTL DY IQKESTLH VLRL GG
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228



 Score = 39.3 bits (90), Expect(2) = 4e-06
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +3

Query: 120 MQIFAKTLTGKTITLEVESS 179
           MQIF KTLTGKTITLEVESS
Sbjct: 1   MQIFVKTLTGKTITLEVESS 20



 Score = 36.2 bits (82), Expect(2) = 4e-06
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +1

Query: 181 TIGIVKVKIQDEEGIPPDQQ 240
           TI +VK KIQD+EGIPPDQQ
Sbjct: 22  TIDMVKSKIQDKEGIPPDQQ 41


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