BLASTX nr result
ID: Coptis25_contig00035397
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00035397 (415 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI38215.3| unnamed protein product [Vitis vinifera] 133 2e-29 ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containi... 133 2e-29 ref|XP_002309169.1| predicted protein [Populus trichocarpa] gi|2... 125 4e-27 ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat... 125 5e-27 ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat... 125 5e-27 >emb|CBI38215.3| unnamed protein product [Vitis vinifera] Length = 595 Score = 133 bits (334), Expect = 2e-29 Identities = 64/137 (46%), Positives = 97/137 (70%) Frame = -2 Query: 414 DEISRVHNIRPTIEHYTGMVYLLSRANLLDEAREVIKEMPMKPDLFVWGALHGGSRIHGE 235 +++S ++N+RP +EHY MV LL RA L++EA E I+ MP++PD FV GAL G +IHG+ Sbjct: 431 EDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGK 490 Query: 234 KCLLEDEDEDVRKELASLEPKDSGAYILMSNIYASNDQWDNSMKMRRTMEEMGVKKILGC 55 L E V K++ +EP+ GAY+LMSNIY+S ++W +++K+R+TM+E ++K GC Sbjct: 491 VEL----GESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGC 546 Query: 54 SSIEVDQNVDEFSAGGR 4 SSIE+D + EF G + Sbjct: 547 SSIELDGVIHEFQKGDK 563 >ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera] Length = 617 Score = 133 bits (334), Expect = 2e-29 Identities = 64/137 (46%), Positives = 97/137 (70%) Frame = -2 Query: 414 DEISRVHNIRPTIEHYTGMVYLLSRANLLDEAREVIKEMPMKPDLFVWGALHGGSRIHGE 235 +++S ++N+RP +EHY MV LL RA L++EA E I+ MP++PD FV GAL G +IHG+ Sbjct: 453 EDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGK 512 Query: 234 KCLLEDEDEDVRKELASLEPKDSGAYILMSNIYASNDQWDNSMKMRRTMEEMGVKKILGC 55 L E V K++ +EP+ GAY+LMSNIY+S ++W +++K+R+TM+E ++K GC Sbjct: 513 VEL----GESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGC 568 Query: 54 SSIEVDQNVDEFSAGGR 4 SSIE+D + EF G + Sbjct: 569 SSIELDGVIHEFQKGDK 585 >ref|XP_002309169.1| predicted protein [Populus trichocarpa] gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa] Length = 619 Score = 125 bits (314), Expect = 4e-27 Identities = 64/135 (47%), Positives = 90/135 (66%) Frame = -2 Query: 414 DEISRVHNIRPTIEHYTGMVYLLSRANLLDEAREVIKEMPMKPDLFVWGALHGGSRIHGE 235 + + RV + P IEHY MV LL RA LDEA +++K MPM+ + VWGAL GG R+H + Sbjct: 372 NSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRD 431 Query: 234 KCLLEDEDEDVRKELASLEPKDSGAYILMSNIYASNDQWDNSMKMRRTMEEMGVKKILGC 55 L+E V K+L +LEP +SG Y+L+SNIY+++ +W+++ K+R M E G+KK+ G Sbjct: 432 TQLVEG----VLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGY 487 Query: 54 SSIEVDQNVDEFSAG 10 S IEVD V EF G Sbjct: 488 SWIEVDGVVHEFLVG 502 >ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820-like [Cucumis sativus] Length = 688 Score = 125 bits (313), Expect = 5e-27 Identities = 64/137 (46%), Positives = 90/137 (65%) Frame = -2 Query: 414 DEISRVHNIRPTIEHYTGMVYLLSRANLLDEAREVIKEMPMKPDLFVWGALHGGSRIHGE 235 + + RV ++ P+IEHY MV LL RA LL+EA ++I MPMKP+ VWGAL GG ++H + Sbjct: 441 NNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKD 500 Query: 234 KCLLEDEDEDVRKELASLEPKDSGAYILMSNIYASNDQWDNSMKMRRTMEEMGVKKILGC 55 L E V K+L LEP +SG Y+ +SNIY+ N +W+ + K+R TM+E ++KI C Sbjct: 501 THLA----EQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRAC 556 Query: 54 SSIEVDQNVDEFSAGGR 4 S IE+D V EF G + Sbjct: 557 SWIEIDGIVHEFLVGDK 573 >ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820-like [Cucumis sativus] Length = 688 Score = 125 bits (313), Expect = 5e-27 Identities = 64/137 (46%), Positives = 90/137 (65%) Frame = -2 Query: 414 DEISRVHNIRPTIEHYTGMVYLLSRANLLDEAREVIKEMPMKPDLFVWGALHGGSRIHGE 235 + + RV ++ P+IEHY MV LL RA LL+EA ++I MPMKP+ VWGAL GG ++H + Sbjct: 441 NNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKD 500 Query: 234 KCLLEDEDEDVRKELASLEPKDSGAYILMSNIYASNDQWDNSMKMRRTMEEMGVKKILGC 55 L E V K+L LEP +SG Y+ +SNIY+ N +W+ + K+R TM+E ++KI C Sbjct: 501 THLA----EQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRAC 556 Query: 54 SSIEVDQNVDEFSAGGR 4 S IE+D V EF G + Sbjct: 557 SWIEIDGIVHEFLVGDK 573