BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035396
         (268 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32639.3| unnamed protein product [Vitis vinifera]              119   3e-25
ref|XP_002273763.1| PREDICTED: pentatricopeptide repeat-containi...   119   3e-25
ref|XP_003539183.1| PREDICTED: pentatricopeptide repeat-containi...   117   1e-24
ref|XP_003554903.1| PREDICTED: pentatricopeptide repeat-containi...   115   5e-24
ref|XP_003594404.1| Pentatricopeptide repeat-containing protein ...   111   7e-23

>emb|CBI32639.3| unnamed protein product [Vitis vinifera]
          Length = 459

 Score =  119 bits (297), Expect = 3e-25
 Identities = 55/88 (62%), Positives = 70/88 (79%)
 Frame = -3

Query: 266 LFYDMSKRGTRPTGAVLAALVNACRLNMDIERGEYAAKCLIELEPDKPANIVSLSNFYAA 87
           LF +M K  T+PT AV AA++NAC  N+D+ RGE+AAK L+ELEP+KP N V LSNFYAA
Sbjct: 359 LFNNMIKNQTKPTAAVWAAILNACSHNLDVSRGEFAAKNLLELEPNKPGNYVLLSNFYAA 418

Query: 86  IGRWDRVEDLRNIMNEKGLRKEAGSSWI 3
           +GRWD V +LR+IM +KGL KE G+SW+
Sbjct: 419 VGRWDSVNELRSIMRKKGLVKETGNSWV 446


>ref|XP_002273763.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 498

 Score =  119 bits (297), Expect = 3e-25
 Identities = 55/88 (62%), Positives = 70/88 (79%)
 Frame = -3

Query: 266 LFYDMSKRGTRPTGAVLAALVNACRLNMDIERGEYAAKCLIELEPDKPANIVSLSNFYAA 87
           LF +M K  T+PT AV AA++NAC  N+D+ RGE+AAK L+ELEP+KP N V LSNFYAA
Sbjct: 398 LFNNMIKNQTKPTAAVWAAILNACSHNLDVSRGEFAAKNLLELEPNKPGNYVLLSNFYAA 457

Query: 86  IGRWDRVEDLRNIMNEKGLRKEAGSSWI 3
           +GRWD V +LR+IM +KGL KE G+SW+
Sbjct: 458 VGRWDSVNELRSIMRKKGLVKETGNSWV 485


>ref|XP_003539183.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
           mitochondrial-like [Glycine max]
          Length = 547

 Score =  117 bits (293), Expect = 1e-24
 Identities = 56/87 (64%), Positives = 70/87 (80%)
 Frame = -3

Query: 263 FYDMSKRGTRPTGAVLAALVNACRLNMDIERGEYAAKCLIELEPDKPANIVSLSNFYAAI 84
           +++M  +GTRPT  V  AL+NAC LN D+ERGE AAK L++LEP+K +NIV +SNFYAAI
Sbjct: 447 YHNMVVQGTRPTAGVWVALLNACSLNQDVERGELAAKHLLQLEPNKASNIVLVSNFYAAI 506

Query: 83  GRWDRVEDLRNIMNEKGLRKEAGSSWI 3
            RWD VE+LR+IM  KGL KEAG+SWI
Sbjct: 507 DRWDCVEELRSIMRTKGLAKEAGNSWI 533


>ref|XP_003554903.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
           mitochondrial-like [Glycine max]
          Length = 530

 Score =  115 bits (287), Expect = 5e-24
 Identities = 55/87 (63%), Positives = 69/87 (79%)
 Frame = -3

Query: 263 FYDMSKRGTRPTGAVLAALVNACRLNMDIERGEYAAKCLIELEPDKPANIVSLSNFYAAI 84
           +++M  +GTRPT  V  AL+NAC LN D+ER E AAK L++LEP+K +NIV +SNFYAAI
Sbjct: 430 YHNMVVQGTRPTAGVWVALLNACSLNQDVERSELAAKHLLQLEPNKASNIVLVSNFYAAI 489

Query: 83  GRWDRVEDLRNIMNEKGLRKEAGSSWI 3
            RWD VE+LR+IM  KGL KEAG+SWI
Sbjct: 490 DRWDCVEELRSIMRTKGLAKEAGNSWI 516


>ref|XP_003594404.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355483452|gb|AES64655.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 516

 Score =  111 bits (277), Expect = 7e-23
 Identities = 53/87 (60%), Positives = 67/87 (77%)
 Frame = -3

Query: 263 FYDMSKRGTRPTGAVLAALVNACRLNMDIERGEYAAKCLIELEPDKPANIVSLSNFYAAI 84
           + +M  +GT PT  V  +L+NAC L  D ERGE+AAK L++LEP+K +NIV  SNFYAAI
Sbjct: 417 YQNMIDQGTSPTAGVWISLLNACSLGQDFERGEFAAKSLLQLEPNKASNIVLASNFYAAI 476

Query: 83  GRWDRVEDLRNIMNEKGLRKEAGSSWI 3
           GRWD V +LR++M EKGL KEAG+SWI
Sbjct: 477 GRWDCVGELRSMMREKGLVKEAGNSWI 503