BLASTX nr result
ID: Coptis25_contig00035396
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00035396 (268 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI32639.3| unnamed protein product [Vitis vinifera] 119 3e-25 ref|XP_002273763.1| PREDICTED: pentatricopeptide repeat-containi... 119 3e-25 ref|XP_003539183.1| PREDICTED: pentatricopeptide repeat-containi... 117 1e-24 ref|XP_003554903.1| PREDICTED: pentatricopeptide repeat-containi... 115 5e-24 ref|XP_003594404.1| Pentatricopeptide repeat-containing protein ... 111 7e-23 >emb|CBI32639.3| unnamed protein product [Vitis vinifera] Length = 459 Score = 119 bits (297), Expect = 3e-25 Identities = 55/88 (62%), Positives = 70/88 (79%) Frame = -3 Query: 266 LFYDMSKRGTRPTGAVLAALVNACRLNMDIERGEYAAKCLIELEPDKPANIVSLSNFYAA 87 LF +M K T+PT AV AA++NAC N+D+ RGE+AAK L+ELEP+KP N V LSNFYAA Sbjct: 359 LFNNMIKNQTKPTAAVWAAILNACSHNLDVSRGEFAAKNLLELEPNKPGNYVLLSNFYAA 418 Query: 86 IGRWDRVEDLRNIMNEKGLRKEAGSSWI 3 +GRWD V +LR+IM +KGL KE G+SW+ Sbjct: 419 VGRWDSVNELRSIMRKKGLVKETGNSWV 446 >ref|XP_002273763.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial-like, partial [Vitis vinifera] Length = 498 Score = 119 bits (297), Expect = 3e-25 Identities = 55/88 (62%), Positives = 70/88 (79%) Frame = -3 Query: 266 LFYDMSKRGTRPTGAVLAALVNACRLNMDIERGEYAAKCLIELEPDKPANIVSLSNFYAA 87 LF +M K T+PT AV AA++NAC N+D+ RGE+AAK L+ELEP+KP N V LSNFYAA Sbjct: 398 LFNNMIKNQTKPTAAVWAAILNACSHNLDVSRGEFAAKNLLELEPNKPGNYVLLSNFYAA 457 Query: 86 IGRWDRVEDLRNIMNEKGLRKEAGSSWI 3 +GRWD V +LR+IM +KGL KE G+SW+ Sbjct: 458 VGRWDSVNELRSIMRKKGLVKETGNSWV 485 >ref|XP_003539183.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial-like [Glycine max] Length = 547 Score = 117 bits (293), Expect = 1e-24 Identities = 56/87 (64%), Positives = 70/87 (80%) Frame = -3 Query: 263 FYDMSKRGTRPTGAVLAALVNACRLNMDIERGEYAAKCLIELEPDKPANIVSLSNFYAAI 84 +++M +GTRPT V AL+NAC LN D+ERGE AAK L++LEP+K +NIV +SNFYAAI Sbjct: 447 YHNMVVQGTRPTAGVWVALLNACSLNQDVERGELAAKHLLQLEPNKASNIVLVSNFYAAI 506 Query: 83 GRWDRVEDLRNIMNEKGLRKEAGSSWI 3 RWD VE+LR+IM KGL KEAG+SWI Sbjct: 507 DRWDCVEELRSIMRTKGLAKEAGNSWI 533 >ref|XP_003554903.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial-like [Glycine max] Length = 530 Score = 115 bits (287), Expect = 5e-24 Identities = 55/87 (63%), Positives = 69/87 (79%) Frame = -3 Query: 263 FYDMSKRGTRPTGAVLAALVNACRLNMDIERGEYAAKCLIELEPDKPANIVSLSNFYAAI 84 +++M +GTRPT V AL+NAC LN D+ER E AAK L++LEP+K +NIV +SNFYAAI Sbjct: 430 YHNMVVQGTRPTAGVWVALLNACSLNQDVERSELAAKHLLQLEPNKASNIVLVSNFYAAI 489 Query: 83 GRWDRVEDLRNIMNEKGLRKEAGSSWI 3 RWD VE+LR+IM KGL KEAG+SWI Sbjct: 490 DRWDCVEELRSIMRTKGLAKEAGNSWI 516 >ref|XP_003594404.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355483452|gb|AES64655.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 516 Score = 111 bits (277), Expect = 7e-23 Identities = 53/87 (60%), Positives = 67/87 (77%) Frame = -3 Query: 263 FYDMSKRGTRPTGAVLAALVNACRLNMDIERGEYAAKCLIELEPDKPANIVSLSNFYAAI 84 + +M +GT PT V +L+NAC L D ERGE+AAK L++LEP+K +NIV SNFYAAI Sbjct: 417 YQNMIDQGTSPTAGVWISLLNACSLGQDFERGEFAAKSLLQLEPNKASNIVLASNFYAAI 476 Query: 83 GRWDRVEDLRNIMNEKGLRKEAGSSWI 3 GRWD V +LR++M EKGL KEAG+SWI Sbjct: 477 GRWDCVGELRSMMREKGLVKEAGNSWI 503