BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00035347
         (309 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003533464.1| PREDICTED: transcription initiation factor T...    44   4e-08
ref|XP_003523903.1| PREDICTED: transcription initiation factor T...    44   5e-08
ref|XP_003612586.1| Transcription initiation factor TFIID subuni...    45   6e-07

>ref|XP_003533464.1| PREDICTED: transcription initiation factor TFIID subunit 1-A-like
            [Glycine max]
          Length = 1910

 Score = 43.9 bits (102), Expect(2) = 4e-08
 Identities = 20/36 (55%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = +2

Query: 17   KPLRGGVSCRACGQMGHIRTNKKCPKY-EHLDIQVK 121
            KP R    C ACG+ GH+RTNK CPKY E L+ Q++
Sbjct: 1425 KPSRETFVCGACGKAGHMRTNKNCPKYGEDLETQLE 1460



 Score = 38.1 bits (87), Expect(2) = 4e-08
 Identities = 24/59 (40%), Positives = 33/59 (55%)
 Frame = +1

Query: 130  GKSNVLDPSSHFHHKTLMEKSTSEGATEIPVVETSENSRIAVSETKVPHLRFKWGPAEK 306
            GKS+ +DPSS   HK   +KS S+ AT++  V+ S         TK+P L+FK    EK
Sbjct: 1469 GKSSFVDPSSLSQHKAPSKKSMSKSATKVAPVDNS---------TKIP-LKFKCSSTEK 1517


>ref|XP_003523903.1| PREDICTED: transcription initiation factor TFIID subunit 1-A-like
            [Glycine max]
          Length = 1919

 Score = 43.9 bits (102), Expect(2) = 5e-08
 Identities = 20/36 (55%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = +2

Query: 17   KPLRGGVSCRACGQMGHIRTNKKCPKY-EHLDIQVK 121
            KP R    C ACG+ GH+RTNK CPKY E L+ Q++
Sbjct: 1435 KPSRETFVCGACGKAGHMRTNKNCPKYGEDLETQLE 1470



 Score = 37.7 bits (86), Expect(2) = 5e-08
 Identities = 24/59 (40%), Positives = 33/59 (55%)
 Frame = +1

Query: 130  GKSNVLDPSSHFHHKTLMEKSTSEGATEIPVVETSENSRIAVSETKVPHLRFKWGPAEK 306
            GKS+ +DPSS   HK   +KS S+G T+I  V+ S         +K+P L+FK    EK
Sbjct: 1479 GKSSFVDPSSLSQHKAPSKKSMSKGTTKIAPVDNS---------SKIP-LKFKCSSTEK 1527


>ref|XP_003612586.1| Transcription initiation factor TFIID subunit 1-A [Medicago
            truncatula] gi|355513921|gb|AES95544.1| Transcription
            initiation factor TFIID subunit 1-A [Medicago truncatula]
          Length = 2196

 Score = 45.1 bits (105), Expect(2) = 6e-07
 Identities = 18/27 (66%), Positives = 20/27 (74%)
 Frame = +2

Query: 17   KPLRGGVSCRACGQMGHIRTNKKCPKY 97
            KP R    C ACGQ+GH+RTNK CPKY
Sbjct: 1696 KPSRETFVCGACGQLGHMRTNKNCPKY 1722



 Score = 33.1 bits (74), Expect(2) = 6e-07
 Identities = 23/59 (38%), Positives = 31/59 (52%)
 Frame = +1

Query: 130  GKSNVLDPSSHFHHKTLMEKSTSEGATEIPVVETSENSRIAVSETKVPHLRFKWGPAEK 306
            GKS+  DPSS   H+   +KS S+  T++  VE S         TK+P L+FK    EK
Sbjct: 1740 GKSSFGDPSSQSQHQLPSKKSISKIVTKLAPVENS---------TKIP-LKFKCSSTEK 1788